BAC Information

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BAC

Clone NameMSMg01-068C13
Chromosome2 (Build37)
Map Location 66,970,170 - 66,970,460
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt3, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540
Downstream geneGm1322, Cmya3, LOC621171, LOC227995, B3galt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068C13.T7 (MSMg01no068_c13.b1)MSMg01-068C13.TJ (MSMg01no068_c13.g1)
ACCAG292718AG292719
length707713
length of high quality
(start - end)
295 (45 - 339)285 (83 - 367)
definitionCHROMAT_FILE: MSMg01no068_c13.b1 PHD_FILE: MSMg01no068_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:29 2005CHROMAT_FILE: MSMg01no068_c13.g1 PHD_FILE: MSMg01no068_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTATTTAGTCTAGAGTGACCTCAGACTCACAGAGAATGACCAGCT
TCTGCGTCATAAGTGCTGAGTTTAACAGTGAGTGCCACCATGGCAGCCCA
AGTGTAGTTTTTAATCTGCCCTCTCAAACTCAGCTTTTATAATATTTTTT
ATTAGCAAGTAATGTCACGGATTTCATCTTGACATTTTCCTATAAACTCA
TCATATGTATGTTGAAAAAGAATGTTCTCCATGGTCTCATAGATTTCAAA
ACCTGGTACCAGTTAGCAGAACTATTTGGGAAGGATTAGAAGGCAACGCC
TTATTGGAAGATTTTTGTCATCGCCCCCCCCATTTGAGGTCTCAATAGCT
TCATGACTTTCCCAGTGCATTCTCTGACTAGAGATGTGTCTCAAGATGTA
AGCTCTCAGCTATACTCCAACATTGTGCTTGCCTACCTACAGCTATGATT
TTGTTATAGTGGACATAGCCTCTAGCTTCTCTGAAACCAATAGTCTCATA
TAAACTCTTCTGTAAGTAGCCTTGGTTATGGCATCTTATCCCAGCAATTA
ATAAGTAACTAAGACAGGTTTTGTGGATGCCGTTCTTGGTATCGCTGGAA
TTCTGTATTCTTACTTGATATATGGCCTGCCTTTCCCCTTAAGTTTAAAA
TGATTGG
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGACCAGAAAATATTT
TCAATGAAATTATAAAAGAAAAAAATGTTATAACATAAAGAATAACATGC
CTAAAAGGTGCAAAAGCATACAGAACACCAAGTAGATTAGATTAAAAAGA
ATGTCCCCTTGCTACATAATAATCAAAGCACTAAACCTACAGATCAAAGA
AAGAATATTAATAGGTACAAGGGAAGAGGCTAGGTAACATATAAAGGTAG
AACTGTTAAAATTATATCTAATTCCTCTATAAAGACTCTAAAAACAGAAA
GGCCTGGACACATGTCTTTTTCAACCCCCCACCCCACAGATACCATCCCA
TACTAATATACCAAGAAAAACTTTCAATCATCATAAATGAAGAAAATAGG
ATATTTTATAGAAAGGCAAATTTAAAGAATATCTATCTACAAATCTAGTA
CAGAAGTTATTAGAAGGTAAATTTCAATAACAGTAGGCTAGCTTCAGCCA
TGAAAACACAGAAAATGAATACTTTCACACTAAAATAATTCTCACATAAA
ATAAGAAGAGAAATAACCCTCCACAACCACCACCCAATAACCCAACATCA
ACAACGATGTCTTTTACACTACTCTCACTGCCCCCATTACTAAAACCACC
ATTACTACAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_c13.b1 MSMg01no068_c13.b1 CHROMAT_FILE:
MSMg01no068_c13.b1 PHD_FILE: MSMg01no068_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:29 2005
         (295 letters)



>mm_chr2_66969950_66970644
          Length = 695

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactatttagtctagagtgacctcagactcacagagaatgaccagcttctgcgtc 64
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 511 gaattcgctatttagtctagagtgacctcagactcacagagaatggccagcttctgcgtc 452

                                                                       
Query: 65  ataagtgctgagtttaacagtgagtgccaccatggcagcccaagtgtagtttttaatctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 451 ataagtgctgagtttaacagtgagtgccaccatggcagcccaagtgtagttttaaatctg 392

                                                                       
Query: 125 ccctctcaaactcagcttttataatattttttattagcaagtaatgtcacggatttcatc 184
           |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 391 ccctctcaaattcagcttttataatattttttattagcaagtaatgacacggatttcatc 332

                                                                       
Query: 185 ttgacattttcctataaactcatcatatgtatgttgaaaaagaatgttctccatggtctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttgacattttcctataaactcatcatatgtatgttgaaaaagaatgttctccatggtctc 272

                                                              
Query: 245 atagatttcaaaacctggtaccagttagcagaactatttgggaaggattag 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atagatttcaaaacctggtaccagttagcagaactatttgggaaggattag 221


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)