BAC Information

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BAC

Clone NameMSMg01-068F08
Chromosome2 (Build37)
Map Location 17,213,420 - 17,213,939
singlet/doubletsinglet
Overlap genenone
Upstream genePlxdc2, 4930515L03Rik, LOC383665
Downstream geneNebl, LOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik, Mllt10, LOC641254, Dnajc1, LOC100041388
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068F08.T7 (MSMg01no068_f08.b1)MSMg01-068F08.TJ (MSMg01no068_f08.g1)
ACCAG292852AG292853
length703707
length of high quality
(start - end)
285 (43 - 327)520 (85 - 604)
definitionCHROMAT_FILE: MSMg01no068_f08.b1 PHD_FILE: MSMg01no068_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:44 2005CHROMAT_FILE: MSMg01no068_f08.g1 PHD_FILE: MSMg01no068_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGG
AATTCTGCCAATTTCTGAGTATATCTATCCCATTATACATTCTGGAACTG
GGGAAATCACCACAGGATGTGTCCCGGGACCTACTGGACCTACTGTGAGT
CGGACATCAGTCAAAACTCCATTAATCACCTGCCCTCCATAAGCCCCTAC
TTTAACTGGAGGGCCACAATGTTTCTTGGGATCCCCTGGGATCAGTGTCA
ACTCAGAACCAGTATCCAGCAGACCCCGAAAAGTCTGATTATTTCCTTTT
CCCCAGTGTACAGTTACCCTTGTAAAAGGTCGTAGGTCCCTCTGGGGAAG
AACTGGAGAATTTTTTCAGCACCCCCCCTGAGTGTCTTATCAAGATCCTT
CCTCAGTGGAACCTGGCCACCCCTAAAAAAAAGGAGTTCTGGAGCGGCGG
ACTGTCTCAAGTCTGGAAATTGACTCACTGGCCGAGATTGCTGTTTACCA
CGATCTAATGTAGCCTTTCTTTCATTGGGCTGCTTACCACGATCTAATGA
AGCCTTTCTCTCACTTGATTGAGAATCTTTCTGCCTATACAGATCAAACA
AATATGCAGGATGCTTCCTATGTATTTTCGTTCCTGGAAACTCCATGAAT
GGTTAGCCTGTACCAAAGGTTCCGATCGAGTACTTTCATTACAAATTTTC
TCC
NATGCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGTACAAGTCTGAAC
AGTTTGTTTTCAAAGCACAGAAAACACCGGCAGCTCCCATTTCTACATGG
GCTTCATCACAATTTTCTTGTTCTACATGTCAGGAGCTGAGAGAGAAGCT
TCTAAGAACCTTTTCCAAAGCTGCATTTTCCCCTTGAAATATTCATTTAA
GCTGCTCAGTTACCCACTGCATGGTTCATGATAAATTATTCAGATAATTG
CTTTAATTCTCTGCTTCATTTTGCTAATGTAGATTTGTCCTTAGCCTCTA
GATTTATTGTGGGTTTCATATTTTCAGGCAACGACAATTACTGAAGAGCT
GATTGTTTTGTTGAGGTTTGCTGCTGAGGGATAAGAAATAGCTGTGTGTC
CTCATGTCACACAGTTTGAGTCTTTTTTGTGACTCTGATTATTGGATGTA
ATAGAGATAGCACATCTGGGCATGAAAGGTGAGGGGAAGAAGCTGCTAAA
ATCACTGATAAGAGTTATTGGATGGAATTTGAAAACATAATCAAATATTA
CCTCTAATTAGGTTGTAACCTAATTTAATTCAAACAGCAATGATGTTTGA
ACTCTCCTCTCTCCCAACTTACTAAACCCAAAACATAATGCTTTTTTTTT
CAGTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_f08.g1 MSMg01no068_f08.g1 CHROMAT_FILE:
MSMg01no068_f08.g1 PHD_FILE: MSMg01no068_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:44 2005
         (520 letters)



>mm_chr2_17213220_17214139
          Length = 920

 Score =  951 bits (492), Expect = 0.0
 Identities = 513/520 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtacaagtctgaacagtttgttttcaaagcacagaaaacaccggcagctcccatttct 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 720 tagtacaagtctgaacagtttgttttcaaagcacagaaaacacaggcagctcccatttct 661

                                                                       
Query: 61  acatgggcttcatcacaattttcttgttctacatgtcaggagctgagagagaagcttcta 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 660 acatgggcttcatcacaattttcttgttctacatgtcaagagctgagagagaagcttcta 601

                                                                       
Query: 121 agaaccttttccaaagctgcattttccccttgaaatattcatttaagctgctcagttacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agaaccttttccaaagctgcattttccccttgaaatattcatttaagctgctcagttacc 541

                                                                       
Query: 181 cactgcatggttcatgataaattattcagataattgctttaattctctgcttcattttgc 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cactgcacggttcatgataaattattcagataattgctttaattctctgcttcattttgc 481

                                                                       
Query: 241 taatgtagatttgtccttagcctctagatttattgtgggtttcatattttcaggcaacga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 480 taatgtagatttgtccttagcctctagatttattgtgggtttcatattttcagggaatga 421

                                                                       
Query: 301 caattactgaagagctgattgttttgttgaggtttgctgctgagggataagaaatagctg 360
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 420 gaattactgaagagctgattgttttgttgaggtttgctgctgagggattagaaatagctg 361

                                                                       
Query: 361 tgtgtcctcatgtcacacagtttgagtcttttttgtgactctgattattggatgtaatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgtgtcctcatgtcacacagtttgagtcttttttgtgactctgattattggatgtaatag 301

                                                                       
Query: 421 agatagcacatctgggcatgaaaggtgaggggaagaagctgctaaaatcactgataagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agatagcacatctgggcatgaaaggtgaggggaagaagctgctaaaatcactgataagag 241

                                                   
Query: 481 ttattggatggaatttgaaaacataatcaaatattacctc 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttattggatggaatttgaaaacataatcaaatattacctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)