BAC Information

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BAC

Clone NameMSMg01-068H11
Chromosome2 (Build37)
Map Location 44,575,397 - 44,719,631
singlet/doubletdoublet
Overlap geneGtdc1
Upstream geneArhgap15
Downstream geneZeb2, LOC100042661, LOC100041337, LOC666604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068H11.T7 (MSMg01no068_h11.b1)MSMg01-068H11.TJ (MSMg01no068_h11.g1)
ACCAG292954AG292955
length716680
length of high quality
(start - end)
415 (61 - 475)251 (70 - 320)
definitionCHROMAT_FILE: MSMg01no068_h11.b1 PHD_FILE: MSMg01no068_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:54 2005CHROMAT_FILE: MSMg01no068_h11.g1 PHD_FILE: MSMg01no068_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,575,397 - 44,575,811)(44,719,381 - 44,719,631)
sequence
CGGCCGCTAAACGACTCCTATATGTCGAGAATCCGCGGAATTCCACTACT
CAATTCCCAGCTACTGAAGACATTTCAAAACTATTTACCCTCACCACTCA
GCCCCTGTCTTTCTACAGATCCCCTTCACTTGACCTTTGATCTTCTTCAA
CCATAGAAGCACTTGACTCCTGCTCCCTCTGAGTCGACAGGTTCCGCTAC
TGCAGTGCCCACCCACATGCAGGAGTTTTCATTTCATCACCAGCTCTGCC
TAGCTGACTGGTTTCTCATACCTTGGGTATCTGCTTTGTTTGATGCTCCA
ACTTTTATGTTTTTACAAACCCTGTTCAAAATTCCTTCAGTTACGTTTTG
AAGGGGAGGGAGGATGAAAGACAGAGACCATTATCCTAGAGTCAGATCTG
TGTATAACCATTGCAATAACCCGGGTGCTGAATACTCTCAATATGGTGAT
GAGTGCCACTTCCTTCCGTTTCCAGTGTCCATCTTTCACAAATGCCCTAC
CTTCCACTTAAACTCTCTGTCAAGAACACTCTGATTCTGACAGAAATGGC
TTTCAGAAATGCTTTAAGCCACTCCATGCTTGCCCTCCAGTCTCATAAAC
ACTTGTTTCATATTTGTCTGACTGCCTCTTCCAAGACTCTCTCTCATCTT
ATCCTCTCTTTTTCTAAAGCTTGGTCCTTTGCCATGTTTACATAGTAATT
TCTTTTTTCTGTACTA
ATGAAGTGTGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGCGCAATCTATTATGAAAATATATTGGGAAATAGGATTT
TGGAGTAGTCAGTGGATAAAATTGTAGAATTAAAGTTCTGAAATCAGGAG
CAGATTAGAAGCATAACCTGAATGCTAAAACTCCAGGGGAACCCTTAGAG
AATGTGTCCATTGTAATGGGCAGAAAATATCAGCTAGAAGGGAGCTGTGC
AATTGTAGTATTCTGGAATCCAATGGAATGGAGTTTCAGAGACATGATGA
GTAGAAGTAGCCATTGCCTACTATAGTGAGAAATGAAACTAGGCAGACTG
ACTGGCTTTTTGCCAAACTTAATTGCAAATACTTTAGTAAAGTGATGCCT
AAGAACATTAGGTTGTAATAATTTGAACATTGAATATAGGTCTAAATATT
TATTTCATATATATTTTTCCATGCTTATTATTTCCTATATATTATTTTAA
TGAGTCATAGGTTTATTATTTTATGGAGTCGTTTTCTACGGTTCAAATCT
TGGTTTGCTTTGGATCATAAGGGCGGCTATTGGGTGATAGTTATTACTTT
TTCGGGGTTTTTCATATTTTTTACCTATTTTTCTTTTTAACTATCTGCTG
TGTCCCTTTTGCTTCTTCTATTCTCTTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_h11.b1 MSMg01no068_h11.b1 CHROMAT_FILE:
MSMg01no068_h11.b1 PHD_FILE: MSMg01no068_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:54 2005
         (415 letters)



>mm_chr2_44575197_44576011
          Length = 815

 Score =  779 bits (403), Expect = 0.0
 Identities = 412/415 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctactgaagacatttcaaaactatttaccctcaccactcagcccctgtctttctacagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctactgaagacatttcaaaactatttaccctcaccactcagcccctgtctttctacagat 260

                                                                       
Query: 61  ccccttcacttgacctttgatcttcttcaaccatagaagcacttgactcctgctccctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccttcacttgacctttgatcttcttcaaccatagaagcacttgactcctgctccctct 320

                                                                       
Query: 121 gagtcgacaggttccgctactgcagtgcccacccacatgcaggagttttcatttcatcac 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtggacaggttccgctactgcagtgcccacccacatgcaggagttttcatttcatcac 380

                                                                       
Query: 181 cagctctgcctagctgactggtttctcataccttgggtatctgctttgtttgatgctcca 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 cagctctgcctagctgactggtttctcgtaccttgggtatctgctttgtttgatgctcca 440

                                                                       
Query: 241 acttttatgtttttacaaaccctgttcaaaattccttcagttacgttttgaaggggaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttttatgtttttacaaaccctgttcaaaattccttcagttacgttttgaaggggaggg 500

                                                                       
Query: 301 aggatgaaagacagagaccattatcctagagtcagatctgtgtataaccattgcaataac 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 aggatgaaagacagagaccattatcctagagtcagacctgtgtataaccattgcaataac 560

                                                                  
Query: 361 ccgggtgctgaatactctcaatatggtgatgagtgccacttccttccgtttccag 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccgggtgctgaatactctcaatatggtgatgagtgccacttccttccgtttccag 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no068_h11.g1 MSMg01no068_h11.g1 CHROMAT_FILE:
MSMg01no068_h11.g1 PHD_FILE: MSMg01no068_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:54 2005
         (251 letters)



>mm_chr2_44719181_44719831
          Length = 651

 Score =  478 bits (247), Expect = e-139
 Identities = 250/251 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattatgaaaatatattgggaaataggattttggagtagtcagtggataaaattgtagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tattatgaaaatatattgggaaataggattttggagtagtcagtggataaaattgtagaa 392

                                                                       
Query: 61  ttaaagttctgaaatcaggagcagattagaagcataacctgaatgctaaaactccagggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ttaaagttctgaaatcaggagcagattagaagcataacctgaatgctaaaactccagggg 332

                                                                       
Query: 121 aacccttagagaatgtgtccattgtaatgggcagaaaatatcagctagaagggagctgtg 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aacccttagagaaggtgtccattgtaatgggcagaaaatatcagctagaagggagctgtg 272

                                                                       
Query: 181 caattgtagtattctggaatccaatggaatggagtttcagagacatgatgagtagaagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 caattgtagtattctggaatccaatggaatggagtttcagagacatgatgagtagaagta 212

                      
Query: 241 gccattgccta 251
           |||||||||||
Sbjct: 211 gccattgccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)