BAC Information

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BAC

Clone NameMSMg01-068I19
Chromosome2 (Build37)
Map Location 15,517,522 - 15,517,809
singlet/doubletsinglet
Overlap genenone
Upstream geneCacnb2, LOC100041164, LOC625335, LOC625342, LOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588
Downstream geneLOC625457, Plxdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068I19.T7 (MSMg01no068_i19.b1)MSMg01-068I19.TJ (MSMg01no068_i19.g1)
ACCAG293018AG293019
length721716
length of high quality
(start - end)
318 (45 - 362)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no068_i19.b1 PHD_FILE: MSMg01no068_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:01 2005CHROMAT_FILE: MSMg01no068_i19.g1 PHD_FILE: MSMg01no068_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGATCTGTATCTCAGTTTTAATTAGTCTGCTTTTTGCTA
ATTTCTTGAGTTTTTAAAATACATTTTGGATACTAGCCTTATATTTGATG
TATAGATGGTTTTTGGTTGCCATGCTATAGGCTTCCACTTTGTCTGAATG
ATGGTGTTCTTCATCATGCAGAAACTTCCAAGTTACATGAGGTCCCCTTT
ACTAATTGTTGACTTTAGTTACTGTGCTAATAGCGCTCTGTTCATAATGG
TTTTGTGTGTGTGCTAATATTCTTATGGTTATTCTTCACTTTCCCTTCTG
TTTGGTTCATTGTATTTTTTCCCATGATCAAGCCCTTAATCCATTTGTAA
TAGTATTTTTGTACAGGCCCACAAAAAAAAGATAAAAAGAATTCTTTTAC
TGGCATCCACTCAGTTTGAGCTTCTGCGTTTGTTATTGATTACGTCTTTT
TTCTACTAGTGTATTTCTGTCTTCTTTATCCTATTTCTTGTGTTCATAGC
AGTGTGTATTTATGTCTTGGTATTCTCTCTCGATTTCATAGCTCCCTTAT
TTCCTTCGCTTGTGCTTATTATTCCGGGGTTTTAACATTTTTATTTCCCT
CTTTCTTTTTTTTTCATCCTCTTTTTTTTTAGTACTCCCCCTCCTTCCCT
TTTTTACTCATCATATCCTGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCTGTGAGTGAGACAGAAAAACC
ATTTCTATGATCTTATAGTAAACCAAGCTTATTCCTGCAGGCCTTTGCAT
TTACATATCTTGCTGAAATGTGCATTTGTTGTTCTCTAGACCCTTTGGCT
GTCTGCTCAAATTCTATCAGGTCAGCATGCTGAATGTGCTATTTAAAACT
TTGCTCATTCACCCTCACCTTTGGTGCCTGCGTTCTCAGTTCTATGTTCT
CTTACTCACTACTGGACATAAAATATGTTTCGTATTTATTGTTTTACTGA
ATGCATGAATATCTTTTTTCTTTCCACCCCCCGCCCCACCTCAATGCCTA
GAAACACAGTTGGCAGAATACAGACGTTAACTACATATATATTTCTTTAA
CGGATGAGTAAATGACCAAAGGAACCAGATTGAAAGTATTTTAGGGTCTC
TAGAAATCATCTTATATTTTATTTGTAATAAGTGTATCAATTGCGCAATA
GCAGTAATTTACCAATACACACATAATTTGCCTCTCCAAAGTGAGAGTTT
GAAAATGATGACTATGCAAATTTGTCTTGAAACTAAAGCACCCTGAAAAT
AAAATTGCCCCATGCAATTTATACAATGACGACCATTAATTCAAGCCCCC
GATTACATATTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_i19.g1 MSMg01no068_i19.g1 CHROMAT_FILE:
MSMg01no068_i19.g1 PHD_FILE: MSMg01no068_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:01 2005
         (288 letters)



>mm_chr2_15517322_15518009
          Length = 688

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctgtgagtgagacagaaaaaccatttctatgatcttatagtaaaccaagcttattcc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 488 cttctgtgagtgagacagaaaaaccatttctatgatcttatagcaaaccaagcttattcc 429

                                                                       
Query: 61  tgcaggcctttgcatttacatatcttgctgaaatgtgcatttgttgttctctagaccctt 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgcaggccgttgcatttacatatcttgctgaaatgtgcatttgttgttctctagaccctt 369

                                                                       
Query: 121 tggctgtctgctcaaattctatcaggtcagcatgctgaatgtgctatttaaaactttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tggctgtctgctcaaattctatcaggtcagcatgctgaatgtgctatttaaaactttgct 309

                                                                       
Query: 181 cattcaccctcacctttggtgcctgcgttctcagttctatgttctcttactcactactgg 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 308 cattcaccctcacctttggtgcctgcattctcagttctatgttctcttactcactactgg 249

                                                           
Query: 241 acataaaatatgtttcgtatttattgttttactgaatgcatgaatatc 288
           ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 acataaagtatgtttcgtatttattgttttactgaatgcatgaatatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)