BAC Information

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BAC

Clone NameMSMg01-069C12
Chromosome2 (Build37)
Map Location 180,428,128 - 180,428,417
singlet/doubletsinglet
Overlap geneDido1
Upstream geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5
Downstream gene2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069C12.T7 (MSMg01no069_c12.b1)MSMg01-069C12.TJ (MSMg01no069_c12.g1)
ACCAG293482AG293483
length709807
length of high quality
(start - end)
290 (73 - 362)---
definitionCHROMAT_FILE: MSMg01no069_c12.b1 PHD_FILE: MSMg01no069_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:49 2005CHROMAT_FILE: MSMg01no069_c12.g1 PHD_FILE: MSMg01no069_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTAGTATTTCCTTGATTAGGAGAGTTATGAAAAATTTTGCAAATACAG
AAAATCTCTTACAGATGTCTCCTGTCTCATTCTACTTAGAAGAAATAACT
GCATTTTTACTTAATAATATTCAAGGCTATTCTAAAATCCTTAGAAACAT
GTTTATTTTTCAGGCTAACATGTATTTTTCACTTCGGTGTTGGGGATTCA
ATCCATGCTAGTTAGACACTACTAGTGAGCTACATTCCCATCTATAAATT
GAATCTTTTAAAAATTGTTTTTTTTTTCTAGGTTATCTTATTTTATGTGT
ATGATTGTTTTGCCTGCACCCACATCGCTGTAGCACATATGTGCCTGTTG
CCTGCATATTTCCCATGAGAATGAAGTATTTCCTGAGGATATCCTGAAAC
TGGAATTATGGATGGCATGTGCCTGCTGGCTATTACACCCTTTTCCTCTG
TAACAGTATCATCGTTCTCTTAACTGCTTACCTATCCTTTTCGTTTCTTT
CACGTGATCTTTTCTCTAATGATTTTCAACCTTTCACCTCATTGGCCTGT
TTCTTGTTTCCTATTAGGATAGCGAATAGTTTTTTATTAATTTTTTCCCT
TTAATTTTTCAATTTACCTTTTTTGCTTGCCAATTTAGTTCCCTATATCG
CCTTATCAT
TGGAGGCGCCTGGTTCAGACTAAGGGGNGAACNAGAGAATTTTCCGCGAG
AGCCACCGANGNCAGAAGGGGGGAGGGAGGAGAGANACCCCGGCCTGTCC
CCACACCTGAGACAGAGGCCAGACCAGGCAAAGGCCAAAAGAGCCCCAGG
AACCCCACATCGAGGGGACCNCACGAGAAAGCGAGGCCACGCCTCCATAA
GACTACAGTACGCAGAGATTAAGTGGTCACGGAGGTCTCCTGCGATCTTT
CGCCAAGTAACATCCTTGTTGGCATGGCGGTCTCCAGGATTAGAGGTCGA
TCCTTAGATCCTCTCAGCAGAATTTTTTTTTTTTTTGACGAGANACTGCC
CNCACCCACCCAGGACGGAAAGCATATTTTGTAATTTTCCCGAAGGCCGG
AGCACCCGAGAAAGAATAGGGGAGAAGAAGAGGGGAGGCCGGGGCCGCCC
GAGAAAATGCNCATTCCTAAAAACGCTGGCTCTCGGCCCCGCGGGTTGCG
TCTTCTACGTTACTCTTATCACCCTTTCCTAGGTATTCCCTACATAAATT
GTCCATGGACCTTGCTCCCTTAATACCCTTCATACGCCTGGGTTATTATC
CATTGTCCATTCTTCGACTTCTGGCGTTGTATGTAAACCATGCATGGCGT
CCTCCACGTGCTTGCGATTCGATCGCACTCGTCCCTTCTTACTTGGTGTC
TATCCGAGTACACCTCATATGTTGGTTTGACCCCGTTATCCCGGTACGTT
GCCATGTGCTTCTCTTGAGTATTTCCATCCTCTATTCTGTATTTTTTCTC
CTATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_c12.b1 MSMg01no069_c12.b1 CHROMAT_FILE:
MSMg01no069_c12.b1 PHD_FILE: MSMg01no069_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:49 2005
         (290 letters)



>mm_chr2_180428056_180428745
          Length = 690

 Score =  499 bits (258), Expect = e-146
 Identities = 282/294 (95%), Gaps = 8/294 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagttatgaaaaattttgcaaatacagaaaatctcttacagatgtctcctgtctcattc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 362 agagttatgaaaaattttgcaaatacagaaaatctcttacagatgtcttctgtctcattc 303

                                                                       
Query: 61  tacttagaagaaataactgcatttttacttaataatattcaaggctattctaaaatcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tacttagaagaaataactgcatttttacttaataatattcaaggctattctaaaatcctt 243

                                                                       
Query: 121 agaaacatgtttatttttcaggctaacatgtatttttcacttcggtgttggggattcaat 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 242 agaaacatgtttatttttcaggttaacatgtatttttcacttcggtgttggggattcaat 183

                                                                       
Query: 181 ccatgctagttagacactactagtgagctacattcccatctataaattgaatcttttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ccatgctagttagacactactagtgagctacattcccatctataaattgaatcttttaaa 123

                                                                 
Query: 241 aatt----gttttttttttctaggttatcttattttatgtgtatgattgttttg 290
           ||||    |    ||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 122 aattggggg----ttttttctaggttattttattttatgtgtatgagtgttttg 73


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)