BAC Information

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BAC

Clone NameMSMg01-069C15
Chromosome2 (Build37)
Map Location 82,478,094 - 82,478,304
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292
Downstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069C15.T7 (MSMg01no069_c15.b1)MSMg01-069C15.TJ (MSMg01no069_c15.g1)
ACCAG293488AG293489
length682689
length of high quality
(start - end)
211 (110 - 320)94 (134 - 227)
definitionCHROMAT_FILE: MSMg01no069_c15.b1 PHD_FILE: MSMg01no069_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:50 2005CHROMAT_FILE: MSMg01no069_c15.g1 PHD_FILE: MSMg01no069_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATACGACTCCTATATTCAGAGGATCCGCGGAATTCTTTGATGTTCCTT
TTGATGAATTTTAAGACATTTTTAATAAACTGGACTAATAAGATGATGAA
AACACCAACAGAGGGCATATGGGAAATGTTTTAAATGCCCGTGGCGATTA
ATATCGGCTGCAGCTACGTTTCATAACATTTTATAGTATGAAACTGTTAT
TAAACTCCAAAGCCTCATATTCTAAGGCTAAAAGAAACCATTTCTCTTAA
ATTTATTTTTATGAGTTTTCTTCTAGCCTGTTCTGATTATTCTACAATAT
TTCTTTCCTGAATATGAGGGGTTCTAATACACTAATAACTGTTTTTTATA
CCCCCCACCCCTTTTCATCTATCTACCAGACTCTTTGCTCCATTCCGTTC
ATATAAAAAAAAAAAAATTTCTGTGGGAGTCCGTTTATGACTGGCATGCA
ATGATTATGACCTGACATGCTTAAACCATTCTCTCTCTCTCTCTCTCTCT
CTATCTCTATCACTAATCTCACTATTACTCTCTCTTCTTACTTCCAGCGA
TTACGCTTTTGCGTTCTTCGCTATTTACAATTACTTTCCTTCTTCCATGC
CCACTACCTTTTCCCTCCTTCCTTCCTACCCATATCCTCTAACCCTATTG
GATTCCTTCCCTTATTTGTCTTACTCTACTTT
TGCTGTGGGAGGCCTGGCGGCGCCTGGTTGCTTTATTTGGGNGAACNANA
GAAGGTTTCAGGACTACTGGNGNNCATGAAAGGATGATATGATAATCTCG
TTGCTGGCTTTCACCAGAAAATAAAACAGAACTGCACAGAAGTTTGTACA
AAATGTAAAATGCGAGTTGTCAGGAGCTCATAATAGTATTTCAATCTATA
TAAATTTAATGTAGACTTATCAAACAGAGCATGAGTATACCTAGTAAGAA
TGAATTAATAATACATATAAGCACTGGTGGTAATCACACAACATCTTTGT
TCTGAAATTTTTTTTTTTAGATAAATAAATACTTGTAATATTCCAAATTG
TTTTTTTTTTTCCCCCCCCCCCCCTCAATAAACTAGCTTTTATATAATTG
ATTGCTTCCCCATGCCAAAAAAAAAATTACCCCTCGTGACTATTGGTTTC
TCTTACATCATCTTCACCATATTACTTTTCTTTATAATGTTTTCGTTACT
TTTCTCATCTTGACCTTTTTCTCGTCTTCTTCTATTTTACATTTCCCTTT
ATCCCCGTTCTCTTACTCTTCTTCTTTCTTCCCCTTCTCCTTCCTTCAAC
TTTCGCTTCCTTTTTCCCTGCCTCCTTTTCGCTACGCTTCTTTCTTTTCC
CCTTTACTTCTTTTCTCCTTTCCCTCCTTTCCCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_c15.b1 MSMg01no069_c15.b1 CHROMAT_FILE:
MSMg01no069_c15.b1 PHD_FILE: MSMg01no069_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:50 2005
         (211 letters)



>mm_chr2_82477894_82478504
          Length = 611

 Score =  385 bits (199), Expect = e-111
 Identities = 208/211 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagggcatatgggaaatgttttaaatgcccgtggcgattaatatcggctgcagctacgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 agagggcatatgggaaatgttttaaatgcccgtggcgattaatatcggctgcagctacgt 352

                                                                       
Query: 61  ttcataacattttatagtatgaaactgttattaaactccaaagcctcatattctaaggct 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttcaaaacattttatagtatgaaactgttattaaactccaaagcctcatattctaaggct 292

                                                                       
Query: 121 aaaagaaaccatttctcttaaatttatttttatgagttttcttctagcctgttctgatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 291 aaaagaaaccatttctcttaaatttatttttatgagttttcttctagtctgttctgatta 232

                                          
Query: 181 ttctacaatatttctttcctgaatatgaggg 211
           |||||||||||||| ||||||||||||||||
Sbjct: 231 ttctacaatatttcattcctgaatatgaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)