BAC Information

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BAC

Clone NameMSMg01-069G03
Chromosome2 (Build37)
Map Location 159,894,436 - 159,894,703
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043689
Downstream geneGm826, Mafb, LOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069G03.T7 (MSMg01no069_g03.b1)MSMg01-069G03.TJ (MSMg01no069_g03.g1)
ACCAG293653AG293654
length675693
length of high quality
(start - end)
237 (60 - 296)282 (74 - 355)
definitionCHROMAT_FILE: MSMg01no069_g03.b1 PHD_FILE: MSMg01no069_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:07 2005CHROMAT_FILE: MSMg01no069_g03.g1 PHD_FILE: MSMg01no069_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGCTAATACACTCCTATTTCGAGAGAATCCGCGGAATTCAAATCTTTC
AAAAAAAGAACAGGGGTACCAGTGAGTACAGCTTTACAAGGTAAGTCTGG
TCTTACACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGG
AAATAGCTTTACAAGGTATGTTTGGCCTTGAACTTTTTTTAGTGTTAGGA
GCCTTTTTGTTCCTTTTCACATGTTATCAAGTGGTTAAGATAGGGCTGAA
AATTCTGGATGAAATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGA
GAGTATGAGCAAAGAGGAAATATGGTACACAAACTAAGTATATTTGTTTT
TCCAAGGCCCTTGAACCCGAGGAAAAGTTAAGGTCAGGTAAGAATACCTG
GGGAGAGATTAAAAGGAAGGAAAAGATATATGAATAGAATAAAGATCTAT
TAGCGGAGGTCTCTAGGAAAAGGAGCCTATACTCATCACTAGATGAGCTC
AAGGAGCCAGCTCTTGGTAGCTCTAAATCAGATGATGAATTCTCCCCCAA
TGAAACAGACTGGGAGGAAGAATCACCTCATTATGAAGGATAAGGTTCCC
AGCTCATATAAAGTGCTACCTAATCACTTAAGGCAAAAACCTATAACGGC
TTGCCGATATTCCCTTGCTTTCTGA
GCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTACCCATGCCATTTTTTCTTCTCTATG
TTCCCAAGAATCTGGAGACGTGGCTGGCAAAGCACACAGGTATTGTCTAG
AACTCTGTGGATGAAGTTGCACCATTCATAGCGATGAAGATTCCATCAAA
AGGCAGAGCAGATTCTCCAAGTCACAGAATCCCAGGGCCAAACTAAGGAT
TCAACTGAATTTGACTTTGACTGCACAGTTCCCTGATCTTCAGAAGGCAC
TGATCTTTCTTCCTCCTTAGAGAGCTGGGCTTCCTGTTTCCTTGGACCCG
ACTTGTCTGTTTGCAGCCCCACCCCCCTCAGCCCGTTTGCAACACTTAAA
GCAGCGGTTTCCCACAGTGAGGAGACATAAGATCGCACTTGGAGTTAGAT
AACTGTGTACGATGTGTTACTCTGCTCATTTAACTTGCGCCTATCGTTTG
ACTATCCCCCTTTGCGCGTTTCACTTTGGTGAGCAATTGACCATCTACAT
ATGCCCTTTACCCTACGGCTGTATACTTTCTGCCCTGCTTACATGCATTC
TACATTCCCCGCGGTCTTGCGTTCCCCTTCAGCCCTTTATTACGTCGTTT
TCCTTTTCTTTCTTTTGCCCCTTTTCCCCCCTTGCCCCCCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_g03.g1 MSMg01no069_g03.g1 CHROMAT_FILE:
MSMg01no069_g03.g1 PHD_FILE: MSMg01no069_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:07 2005
         (282 letters)



>mm_chr2_159894228_159894903
          Length = 676

 Score =  495 bits (256), Expect = e-144
 Identities = 267/274 (97%), Gaps = 6/274 (2%)
 Strand = Plus / Plus

                                                                       
Query: 9   ccattttttcttctctatgttcccaagaatctggagacgtggctggcaaagcacacaggt 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ccattttttcttctctatgttcccaagaatctggagacgtggctggcaaagcacacaggt 268

                                                                       
Query: 69  attgtctagaactctgtggatgaagttgcaccattcatagcgatgaagattccatcaaaa 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 attgtctagaactctgtggatgaagttgcaccattcatagcgatgaagattccatcaaaa 328

                                                                       
Query: 129 ggcagagcagattctccaagtcacagaatcccagggccaaactaaggattcaactgaatt 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggcagagcagattctccaagtcacagaatcccagggccaaactaaggattcaactgaatt 388

                                                                       
Query: 189 tgactttgactgcacagttccctgatcttcagaaggcactgatctttcttcctccttaga 248
           |||||      |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgact------gcacagttccctgatcttcagaaggcactgatctttcttcctccttaga 442

                                             
Query: 249 gagctgggcttcctgtttccttggacccgacttg 282
           |||||||||||||||||||||||| |||||||||
Sbjct: 443 gagctgggcttcctgtttccttggtcccgacttg 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 676
Length adjustment: 9
Effective length of query: 273
Effective length of database: 667
Effective search space:   182091
Effective search space used:   182091
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)