BAC Information

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BAC

Clone NameMSMg01-069H20
Chromosome2 (Build37)
Map Location 119,211,648 - 119,211,939
singlet/doubletsinglet
Overlap geneInoc1
Upstream geneEif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1
Downstream geneLOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069H20.T7 (MSMg01no069_h20.b1)MSMg01-069H20.TJ (MSMg01no069_h20.g1)
ACCAG293735AG293736
length769776
length of high quality
(start - end)
293 (124 - 416)180 (129 - 308)
definitionCHROMAT_FILE: MSMg01no069_h20.b1 PHD_FILE: MSMg01no069_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:16 2005CHROMAT_FILE: MSMg01no069_h20.g1 PHD_FILE: MSMg01no069_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTTCCTCCCCTCTTTTTTCCCCTCCCCCTCTTTCCCCTCACAAACTTT
CCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAAGCCGCGG
AATTCTTAGAATTTCCACAACACTGGAGCTCAGCAACAAAGTTTTCTTTT
GTCAAACTGTTACTTCATCTGTCAACAGCTGCTATCCAGTATCATCAATC
TCAATTCAAATTTCCATAGGGAGTCAGTTATCAGCTCTAACTCAAAGAGA
TTGCATTCCAAGGTTCACTGCTGATGGAGATGCTGAAGAACATGGTGGGA
CTGAGCATGGCTGAGAGCAGATGATTACCAGGCAGCATACCAGACAACAG
CATCCATAAGGCCTCCTGTGTGTTATTTTAAGGAGGAACTCATCTCTGAA
GCCTTTTCTATGTTGTCTGGCGACTAACACTGGTTCTTTGGTGAGATGGG
ATCTCATGGACCCAGGCTAGCCTTGAGCTTCATATGGAGCTAAGAATGAC
CTTGAATATTGATCCTTTCTTTAGCCTCTACTTCCTAAGTATTAAATATT
CATAGGCAGCTTATTTGTGTACTTATTTAAATTTGGAGCAATTCTGTTAT
TCTGTGCACTATCTGGACCCTGTGTAATGATACACTAAAAAGTATCACTA
TTTAAAGCAAAGAACTGCTGCTGGTCGATGGCGGTTGACGTCTTTAATCC
CCACACTCAGGAGGTATAGACCGGATAATCCCCGAGCCCGATGCCATTTT
GCCCTAACAAGCGAGCTCC
TCTTTTCTTTTCTTTTCTTTATTTTCTTTTTTCCCCCCTTTTCTCAATCC
NNNNTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGCTGCATAAATGGTTCAAC
AGTTAAAAAATGTTTGTTTTATAATGATGAGGATTGGAGTTTAGATCCCA
GTACCCACATAACAAGCTGAGTGTCCCTGTAAACACCTGTAACCTCAGCT
CTGAGAGAGGCAGAGGCAGTAAGCCCCAGGTTCAGAAAGAGACTCTGCCC
CAAAAGAATAGGCAGAGAGTGACAGAGGATGACTGCCAGTGTCCTTCTGG
CCTTCATTTGCACATAGATGCATATTTCTGTGCACGTGTGACATATACAC
ATACATATGCTTCTCTTGCAATGGACCTCTAAGTTTGGTTCCTATTAACC
ACATGCTTGTTAATCCCAGTTCCAGAGGATCTGGTGCCCTCTTTCATATA
CTTGATATAAAGATAGATACATCTCTTAAAAATAAGACTGTTTGATGGTA
GCATATGCCTTTAATCCCAGCACTTGAAAGACAGAGACTGTTAAACCTCT
GCGATTTCATGGCCATTCTGGTCTACAGAGTAAGTTCCTGAATAGACTGC
GTTATGCACTATGAAACCCTGTTTGGCTGGTCGTCGCTGATGATCGCTTT
TACTTCCAGCTTTTTTTATGCCCATGCAGGTGGCATTTCCGACCTGGTAT
GTCTATTCTGCTTTAACCAGCGAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_h20.b1 MSMg01no069_h20.b1 CHROMAT_FILE:
MSMg01no069_h20.b1 PHD_FILE: MSMg01no069_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:16 2005
         (293 letters)



>mm_chr2_119211448_119212140
          Length = 693

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggagctcagcaacaaagttttcttttgtcaaactgttacttcatctgtcaacagctgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggagctcagcaacaaagttttcttttgtcaaactgttacttcatctgtcaacagctgct 260

                                                                       
Query: 61  atccagtatcatcaatctcaattcaaatttccatagggagtcagttatcagctctaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atccagtatcatcaatctcaattcaaatttccatagggagtcagttatcagctctaactc 320

                                                                       
Query: 121 aaagagattgcattccaaggttcactgctgatggagatgctgaagaacatggtgggactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagagattgcattccaaggttcactgctgatggagatgctgaagaacatggtgggactg 380

                                                                       
Query: 181 agcatggctgagagcagatgattaccaggcagcataccagacaacagcatccataaggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 agcatggctgagagcagatgattaccaggcagcataccagacaacagcatccacaaggcc 440

                                                               
Query: 241 tcctgtgtgttattttaaggaggaactcatctctgaagccttttctatgttg 292
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctgtgtgctattttaaggaggaactcatctctgaagccttttctatgttg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)