BAC Information

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BAC

Clone NameMSMg01-069H23
Chromosome2 (Build37)
Map Location 46,976,881 - 46,977,150
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069H23.T7 (MSMg01no069_h23.b1)MSMg01-069H23.TJ (MSMg01no069_h23.g1)
ACCAG293741AG293742
length770715
length of high quality
(start - end)
233 (39 - 271)261 (379 - 639)
definitionCHROMAT_FILE: MSMg01no069_h23.b1 PHD_FILE: MSMg01no069_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:16 2005CHROMAT_FILE: MSMg01no069_h23.g1 PHD_FILE: MSMg01no069_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGAATTCTT
TGTTTATCTCCGTACCCAGAGACTAAACCCCCACCAAAGAGTACACATAA
ACAGATTCATGGCTCCAGCTGCATATGTAGCATAGGATGGCCTTGTTGGG
CATCAAAGGGAGGACAGGCCCTTAGTCCTGTGAAGGCCCAATGCCCCAAT
GTAGGGGAATGCCAGAGTGTGGAGAGAGTGGGTGGGTGAGTGGGTAAAAC
CCTCATAGAAATGGGGGGATGGGGATGGTATAGGGAGATTTCCCCGCTCC
TTTTCTTTTCTCTTCTTTTTTTTCCGCGGTTCTCCCCCCTCGCCCGCTGA
GTTTTATAATGTTCCTCTCCCCCCTCACATCGTTTATCCCCGTCTTTCCT
GTTTCGTGTTCTTCTCCGCCCCGTCTTTGTTTTGTTCTTTCGCGTCTTTC
GCGCGCTTTTTTTTTTTGTTGCGTCCCTTTGCCCCGTTATTCGCTCTTTC
TGTTTTCTCTCTGTACGTCTTCATTTTCCTTCCTCCCTCTCTCCTCTTGC
TTTTCCCCAACACCCTCCCGCAGATAGATCGCTCCTTTTTGTTTCGCCTC
CCCCACTTTTTTTTTCCCGTTCCCCCCTTACTCTCTTTCGCCTCCCATTA
TTCGCCCCTCGTTTATTTCTCCTTCGCATTCCCGCTTCTTCGCTTTTCCT
CGCCCCTGTTAATTCCCCCCCGCCCTATGTTTCGCAGCCAGGCTTCCTTG
TCCGCATACGCCCTGTTTTA
ATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAAGTTATGCAATTAGAGTTCCAAGTTATGCAA
TTGTTTATAAATGAGACACCTGTATAAATATTTACAATTAGGGAGTTCTT
TCTATTAGCAGGTTTAATAAAAGGAGATAATGCTTTTGCACAACTAAATA
TTTTTAAAGATTTTGTATAATTATATAAACTTATATTATAGGATATATAT
AGAAAATATATGGAAAATACAACTACATCTTGTTTCATTAAGAACGAATA
CTTTTAAGATAACAAATTTATATATTGTGTGTGTGTGTGTATGTCGTCAC
TAGATCATATCAGTTACCGCACCTCTAAGTTACAAATGAAAGGTAGAACT
TTACTATCAAGTACATTTTACCGTTTAGTTATATGGTTTGCTGACTCTTT
ATCTGTGCCATTAATGATGTTCAATGATGTGGTTTGCAGAAATTAAGATT
TCGTTGAAATGAACAAGCTGACATATGATAGGTGAAGAATACGAATTCTT
CATTTTAAATTAACTTAATTATTTCATAATCATTTGGAGTATTTAATGTT
TCATTGCTACTTTTAAATAATTTGTTGGATATTCAGATAAATAGACAATT
AAAACTTTTCAAGATGATGGGTGCATTAATTATTTTTCCATAATGCATAT
CTAGTTTGGCAAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_h23.g1 MSMg01no069_h23.g1 CHROMAT_FILE:
MSMg01no069_h23.g1 PHD_FILE: MSMg01no069_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:16 2005
         (261 letters)



>mm_chr2_46976681_46977350
          Length = 670

 Score =  449 bits (232), Expect = e-130
 Identities = 257/270 (95%), Gaps = 9/270 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttacaaatgaaaggtagaactttactatcaagtacattttaccgtttagttatatggtt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 470 gttacaaatgaaaggtagaactttactgtcaagtacattttaccgtttagttatatggtt 411

                                                                       
Query: 61  tgctgact-----ctttatctgtgccattaatgatgttcaatgatgtggtttgcagaaat 115
           ||||||||     |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgctgactctttactttatctgtgccattaatgatgttcaatgatgtggtttgcagaaat 351

                                                                       
Query: 116 taagatttcgttgaaatgaacaagctgacatatgataggtgaagaatacgaattcttcat 175
           || |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 350 taggatttcgttgaaatgaccaagctgacatatgataggtgaagaatatgaattcttcat 291

                                                                       
Query: 176 tttaaattaac----ttaattatttcataatcatttggagtatttaatgtttcattgcta 231
           |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tttaaattaacttaattaattatttcataatcatttggagtatttaatgtttcattgcta 231

                                         
Query: 232 cttttaaataatttgttggatattcagata 261
           ||||||||||||||||||||||||||||||
Sbjct: 230 cttttaaataatttgttggatattcagata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 670
Length adjustment: 9
Effective length of query: 252
Effective length of database: 661
Effective search space:   166572
Effective search space used:   166572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)