BAC Information

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BAC

Clone NameMSMg01-069L01
Chromosome2 (Build37)
Map Location 72,655,845 - 72,656,109
singlet/doubletsinglet
Overlap genenone
Upstream geneItga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik
Downstream geneSp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069L01.T7 (MSMg01no069_l01.b1)MSMg01-069L01.TJ (MSMg01no069_l01.g1)
ACCAG293888AG293889
length703708
length of high quality
(start - end)
268 (48 - 315)79 (123 - 201)
definitionCHROMAT_FILE: MSMg01no069_l01.b1 PHD_FILE: MSMg01no069_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:31 2005CHROMAT_FILE: MSMg01no069_l01.g1 PHD_FILE: MSMg01no069_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTCTTTCTTCGCCATTTTTGGGCAGCTGTTTCTGTTTCTTTCA
GGAACTTATTTGTCTCAGTTCTTCAAGCATATTTATAGTTGCTCTTTTGA
GTTCTTAGCCTTGGATTTTCATCTAACACACTCTCAGTAAATGCCATTCA
TTTAGGTTAGTAAATCCTGCAGGAGTTATGGTACTTTGGTTTTTCATGTT
TCTTATGGTACAGTGTTGGCACTTCATTGTTTCAGCTTTTTTTTTACTCA
GCTATACTATTTCCGTTGATGTATTTACAATGGCCAAGTGGGGCTTAGAT
GTGGTACAGTAGAGGCGAGTAGTTCAGTAACTAACTCTTCAGGCTAGAAT
CTCGGCAACTGATGAAGACTGTGTGTTAGTCTCTCTGCACATTATTTTGT
AGTTCGGCCTGTACAATGTTCTGCATGTCTGATCCGTCTATGGCTCTGAT
TTCCCCCCCCGTTCACGCTTTTTTTTCCCGTTTCCGTATACCTTTTTGCC
TATTGTTCCGCCACCCGTTTTGTTTCATTAACCCCCTACCTATTGCTCTC
ACTTTTTCTACCCCTTTGTTGCTCCCCCTCCCCTCATTTCCTTGCCTCCC
CCCTTTTCCTCCCCCCTTTTCTCATACCACATCCCTTTCGCTTCCCATTT
TTG
ATCAATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTCTTCCTTCTCCAGCTCCCA
TGTGCATGAGTGACACAGGAAGTCCCGCTCCCTGGAATACATGTCCAATC
AAGCACTGGGGAATCTGATACAGTTTCCTTTCCTGTTTAGCTTCTAGATA
GCAATGCTTAACGTAATTCTTCCACCTGAGTCTGTCCATAATATAGAACT
TGTTTTTACGAAGCCAGGTCTCTGCTACATCTAAACTCTTTATCATTTTG
AATACAGAGATTGAGTGAATTCTCTTTCCTACGATTAAAAAAAAATTCAA
AAATCCATTATTTTTTATACCCCCCCCCCCATCTTGGATTGGCTATCTCT
TAGCTTCTCTCCACCCACATCATCTAGAAAAAACATTGCATGATTGCAAT
TATTTCTCCCCTGCTGTTTGTTACCATCCTATTGTTACGTTTTTCTTTCT
CCACGTTCCCGTTCCCTCCACGTTTTTGACCTTGATCGACCATATTTTTT
CCCCCCCTCTTTTTTTATGTTAATTTCCCCGCCCACTACCACACATTCTT
TCCCGCCTCCCTTTTTTTTTCCCAATGCCTCTTCACCTCGCGTACATCCT
GGTAGATCTCCATCCCCCTTTACCTCTTATCCCCCCCTTGTACCTTCTCT
AACCTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_l01.b1 MSMg01no069_l01.b1 CHROMAT_FILE:
MSMg01no069_l01.b1 PHD_FILE: MSMg01no069_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:31 2005
         (268 letters)



>mm_chr2_72655642_72656311
          Length = 670

 Score =  422 bits (218), Expect = e-122
 Identities = 253/266 (95%), Gaps = 4/266 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctctttcttcgccatttttgggcagctgtttctgtttctttcaggaacttatt 63
           |||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 468 ggaattcctctttctt-gtcatttttgggcagctgtttctgtttttttcaggaacttatt 410

                                                                       
Query: 64  tgtctcagttcttcaagcatatttatagttgctcttttgagttcttagccttggattttc 123
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tgcctcagttcttcaagcatatttatagttgctcttttgagttcttagccttggattttc 350

                                                                       
Query: 124 atctaacacactctcagtaaatgccattcatttaggttagtaaatcctgcaggagttatg 183
           |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 349 atctaacatactctcagtaaatgccattcatttaggttagtaaatcctacaggagttatg 290

                                                                       
Query: 184 gtactttggtttttcatgtttcttatggtacagtgttggcacttcattgtttcagctttt 243
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct: 289 gtactttggtttttcatgtttcttatggtacagtgttgggatttcattgtttcagttttt 230

                                     
Query: 244 ttttt---actcagctatactatttc 266
           |||||   | ||||||||||||||||
Sbjct: 229 ttttttttaatcagctatactatttc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 670
Length adjustment: 9
Effective length of query: 259
Effective length of database: 661
Effective search space:   171199
Effective search space used:   171199
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)