BAC Information

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BAC

Clone NameMSMg01-069P18
Chromosome2 (Build37)
Map Location 40,887,604 - 40,887,809
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629, LOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069P18.T7 (MSMg01no069_p18.b1)MSMg01-069P18.TJ (MSMg01no069_p18.g1)
ACCAG294113AG294114
length685776
length of high quality
(start - end)
207 (46 - 252)242 (131 - 372)
definitionCHROMAT_FILE: MSMg01no069_p18.b1 PHD_FILE: MSMg01no069_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:53 2005CHROMAT_FILE: MSMg01no069_p18.g1 PHD_FILE: MSMg01no069_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAATTCCAGAAATCCGCGGAATTCTTGAAATCCCACATGATCAGAGTTG
TAGAAACAAATTCTTCAGAGTAATTAAATATGACAAATATTTCGAAGTAC
AAAACTAAGTGTGAATGTTCGAAAATGAAGAAATAGAAGAAACTCTATTT
TTACATGTATTTACTTTTAATGTCCCTGATAACCTATTTTAATTGTAATC
TTTTAAATGCCATTTTTGCTTGTTTCATTGTTAATGTTTCTATCGGAACT
AGAAGTATGGCTACGATTTTGATACTCTGCCACAAAAAAAATTTATCTAG
GGATAAACACAAAATATCCAGAGTAGCACTGTTTACCGCAAGGTTGTTCC
AGAATGTTAGGAAGAAAGAAAATTTGGCATCTTTTGCTGAGATCTTGTCT
GTGTTTGTCCCTAGAGAACATTTTGCTCACATCAAAGCTGTCTTTGTTCC
CAACATCAAGACTTCTTCTGAAGACCTGTTAAAATTCCTTACAGAAAGAT
AGCTGGAAAAAATCACCCAAACTATCTATAGCTTACATAGCATACTATTA
AGCAAAACATAACTCAATGCGCAAGACCCTATTAACTACCAACACTTGCC
ATTAACTAAAGATTCTGTCTCTCACATATTTTATATTCACCTAGATCGAC
ACTTAATGTTAATTTATCTCACTACCTCCCACCAT
TTTTTTTTTTCTTTTTTTTTTTTTCCTTTTTTCCCCCCTTTTTCAAATTT
CTNTTTACTATGACAGGCGTGGCCTGGCGGCCGCCTGGTTCACAAAAAGA
GGTGACCTATAGAAGGTTTCGCGAAAATTCCACGCTGCAAGTTTGATCAA
AATATTTAATTTCTTTTTCTGAAATCCCCCTGAATTGCATATTATCAACA
ACCAAACATTCCCTTCTATCAGGACTCTAGCATTTATATATCCTCTGAAA
AGTCCCTAGAATTACAAATATCACATACTCGCTCGTTACTCCCCCTCCCC
CCGCCAGAGCACAGCAATCTGTTGTAAAGCAAGCCCAAATCCCATTCCTG
GAATTAAAACAAACAAACACAACAATTCTTATAGGTCTGTGCTTTTAAAG
AAACAAAAATTCTCACTGTTTGACACACACATACAGAGAGATAGAGATAC
AGACACAGAGACAGAGATTTACACAGAGACAGAGATTGCTATAGACAGAT
ATAGACAGATACAGAGAGAGACAGAGTGTTGCACAAGCCAAGGCCTTCTT
ACTGTGTGTGACCCAGAGGATGAATAGGATCAAGGGCAGTTTACCTGCCT
AGTGCATAAACAGTTTCAGTTGCCATGCGATTTCTCATTGGTTCCCTAAC
CTTTGTCCTCAACAGTCCATCGTTTTATCAACACCTAAAGGTTTGTTTTG
TTTGCAAACGCTTTTATTATACACATTGCTTTTCTTCTCTACAAGATTAA
AAAAATGAAATGTTTCCCCCGGCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_p18.b1 MSMg01no069_p18.b1 CHROMAT_FILE:
MSMg01no069_p18.b1 PHD_FILE: MSMg01no069_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:53 2005
         (207 letters)



>mm_chr2_40887404_40888009
          Length = 606

 Score =  369 bits (191), Expect = e-107
 Identities = 203/207 (98%), Gaps = 1/207 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttgtagaaacaaattcttcagagtaattaaatatgacaaatatttcgaagtacaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 agttgtagaaacaaattcttcagagtaattaaatatgacaaatattt-gaagtacaaaac 259

                                                                       
Query: 61  taagtgtgaatgttcgaaaatgaagaaatagaagaaactctatttttacatgtatttact 120
           ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 260 taagtgtgaatgttcaaaaatgaagaaatagaagaaattctatttttacatgtatttact 319

                                                                       
Query: 121 tttaatgtccctgataacctattttaattgtaatcttttaaatgccatttttgcttgttt 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttaatgtccctgataacttattttaattgtaatcttttaaatgccatttttgcttgttt 379

                                      
Query: 181 cattgttaatgtttctatcggaactag 207
           |||||||||||||||||||||||||||
Sbjct: 380 cattgttaatgtttctatcggaactag 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 606
Length adjustment: 9
Effective length of query: 198
Effective length of database: 597
Effective search space:   118206
Effective search space used:   118206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)