BAC Information

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BAC

Clone NameMSMg01-070I06
Chromosome2 (Build37)
Map Location 132,103,521 - 132,103,681
singlet/doubletsinglet
Overlap geneCds2
Upstream genePank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna
Downstream geneProkr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070I06.T7 (MSMg01no070_i06.b1)MSMg01-070I06.TJ (MSMg01no070_i06.g1)
ACCAG294518AG294519
length875748
length of high quality
(start - end)
64 (157 - 220)161 (217 - 377)
definitionCHROMAT_FILE: MSMg01no070_i06.b1 PHD_FILE: MSMg01no070_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:37 2005CHROMAT_FILE: MSMg01no070_i06.g1 PHD_FILE: MSMg01no070_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCCGCCACTGCACCCCGCCCAAACNNNNNCNGAAGGGAAAATAAGGGG
GGAGGTGGTGGGGGGGTTTGTTATTTTTAGTGTTTGTGGGGATTTTAGGA
TTTTTGTGGAGTTCTTTGNNTTTTTNNNNNNNNNNNNNNNGGCAGAGGTC
CGCGGGATTCCAGGCAACGTGTCTCCCCCCAAAATGACCAATCCCATAGC
AATGACCCCTAACGACAGTATATTTACCCTGGAATCCTCAGACGAAGAAT
TATAAAGAAAAGGTGCTTTACTAGAGGAGCTTTGAGGTAGCGCACGGAGA
AAAGCGTACTATCTTTGTAAGTATTGAATTCTTGTATTCATAAGCCGTAG
TACTCATATAAAAATGTTAGACACGCACGGACTGCCTGAGCTCTGCTGTC
AGATTAGAGAGAAGAGGATCCTGGGTAGTTCATTGTACCTGATTAGTTTC
TCTACCCTAGACTCTAAAGTGTAGCATTTCCTTTAGGGTACCAGAGAACC
GAGAGGAGCTTTAGCACAGCTTTGAAATTTCGTGAACGATTTCTTCAGCG
CTGAATGGGTTGAATCCAAGAGGTGTAAACAAAATCAAGTTTCCTTCTGG
GACTGTATGTCATGATTGTCCTGAGACTTTTCGTTTTCATTCTTCTAAGG
GGTTAAATTAAACATTTACCCAGGTGACTAGCCAATTTTTGAAAACAAGT
TGCCATTAGCTTTCTTGGGAATAGGAAACAACCCCATTGTTCCTCCTGGA
GAGTATACCCTGGCGCAGGAAAGCCTTTCTCCCTTTGCCACCTGCAAAAG
GGGGTAGGTAAGCACCTAAGGCCATCTTCCTTCCAGGGACGTAGGGCCTA
CTGGGTAAGGTTTATGAGGAGTCCT
GAATTGGCTATTTGGGTGGTGTGTTTGTAGGCGGGGTACTTGCGGGTTGG
CCCCTCCNNTTTTCCATGATATGAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGAGATGGAG
TTACAAGTGGTTGTAAGCCACCCCTATATCGCCATGCTGGGAACCAACAT
TCAGGTCCTCTGTAAGAGCAACAAGTGTTCTAACTACCGAGTCTTTGTTT
TTTGTTTTTTAATGAAGTACAGTATCTCACCATCTTATTGCTGCAGAGAA
CATGTTACTAATGCAAGCTTCAAAATGTCAGTAGCTTTGACTGTCAGGGA
CTACACATTTGAAATTTCCATGTACTTTGTAGAATAGACGGTTTCTTGGA
TTTTATGTGAATCCATTGTGAGGATTTTTGCATGCTTTCATTTAAAATGT
TGACTGGGTTTTGAGTTAATAGATACACACACACCCTTTGACTGAAATCA
TGTTGAAGATATCTTCATGAAGTTTGTATATCCGTCTATGTATGCATCTC
AGGAATACATTAATGACGTAGCGTCCGCAGAGCACATGATTTTTACCAAC
TTTCTCCTTTCTGGTCTTGCCAATACTTAATCTCCGAATTCAGACTTTCT
TCCTGGGTTTGTTTATTGTACCATTTTATAAACGATCATCTTGAATGGCT
TCCGTTAAAAACCTGTCTTTTAATTGCACTAGGCCTTAGACAATGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_i06.g1 MSMg01no070_i06.g1 CHROMAT_FILE:
MSMg01no070_i06.g1 PHD_FILE: MSMg01no070_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:37 2005
         (161 letters)



>mm_chr2_132103321_132103881
          Length = 561

 Score =  304 bits (157), Expect = 2e-87
 Identities = 160/161 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaacaagtgttctaactaccgagtctttgttttttgttttttaatgaagtacagtatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcaacaagtgttctaactaccgagtctttgttttttgttttttaatgaagtacagtatc 260

                                                                       
Query: 61  tcaccatcttattgctgcagagaacatgttactaatgcaagcttcaaaatgtcagtagct 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tcaccatcttattgctgcagagaacatgctactaatgcaagcttcaaaatgtcagtagct 320

                                                    
Query: 121 ttgactgtcagggactacacatttgaaatttccatgtactt 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgactgtcagggactacacatttgaaatttccatgtactt 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)