BAC Information

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BAC

Clone NameMSMg01-070K15
Chromosome2 (Build37)
Map Location 88,623,291 - 88,623,860
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200
Downstream geneOlfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070K15.T7 (MSMg01no070_k15.b1)MSMg01-070K15.TJ (MSMg01no070_k15.g1)
ACCAG294631AG294632
length666680
length of high quality
(start - end)		570 (61 - 630)570 (76 - 645)
definitionCHROMAT_FILE: MSMg01no070_k15.b1 PHD_FILE: MSMg01no070_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:49 2005CHROMAT_FILE: MSMg01no070_k15.g1 PHD_FILE: MSMg01no070_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:49 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GGCCGCTATACGACTCACTATTCCAAGAGGATCCGCGGAATTCTAATATA
TACAGAAAGTAGGAAAGAGCCTTAAACTCATTGGTATTGGGAGAATTATC
CTGAACGGAACACCAATGACTTGGGTTCTAAGATCAAAAACAGATAAATA
GGACCTCATGAAGCTGAAAAGCTTCTGTAAAGTAAATGTCACCACCAATA
GGACAAATTGGCAACCTACAGATGGGGGTAAAAATTTTCACTAACTCTAC
ATCTGAAAGAGGGTTAATATCCAAAATATATAAAGAACTCAAGAAGTTAA
CCTCCCCTAACCCAAAGAAAGCAGTTAAAAAATGGGGAGCAGAGCTAAAC
AAAATTATCATCTGAGGAATATCAAATGGCTGAGAAGCACCTAAAGAAGT
GTTCAAAGTCCTTAGTGATCAGGGAAATGCATATCAAAACAACCCTGAAT
TCCACCTCACACAAATCAGAATGGCTAAGATAAAAAATTCAAGAGACAGC
CCATGCTGGAGAGGATGTGGAGAAAGAGGAACACTCCTCTATTGCTGGTG
GGATTGAAAACTGGTACAACTGCTCTGGAAATCAAGCTGGCAGTTCATCA
GATACTTGAAAATATCTCAGATAATAGTTCTACCTGAAGACCCAGCTATA
CCACTCTTGGGCAAAT

AACGATGATAGGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATTGCCAGGAATGGGTGAGAGTAT
GTTTGGATGCAGGGGCAAGGGGGAGATTTTAGGGGATTTTTGGAGGGGAA
ATTAGGAGAGGGGATAACATTTGAAATGTAAATAAAGAAAATGTCTAATA
AATAGAATAATTATATTGAAAAGATGTTGATGCTTTCATGAGTGGAGATA
TTTTCATGTTCAAAGGTTTTTATAACATGTCCTCAATCACTTTACTGAGA
ATGACAGAATAATAACAACTATGGATACTATATGTCTTTCAGGTTTTATG
CTAATGTATTTCCTCAATTAGTACCTTTAATCATAAGTAGACAGCATCAT
CTTTACCATAATATAAAAAGCTAAATTAAATAAAAATTCAATGTAGCTAC
CACAGATTTCTTTTTGAAATATTGTTTATATCCCAAATGCTGCCTTCCCC
ACTTACAGAGTCTCTTTTCTATTCCCTTTTCCCACTTCTGAAAGGGTAGG
ACCCCAAATTGAGAGGATGGGGCATTACAATATAATTTTCTCTAGACTCC
TGCATATATTATCATTAGAGTCAAATATTCCTTCTGGTAATGCAGAGGGA
AATATTAGTCTCAATATTTTTTGTTAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_k15.g1 MSMg01no070_k15.g1 CHROMAT_FILE:
MSMg01no070_k15.g1 PHD_FILE: MSMg01no070_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:49 2005
         (570 letters)



>mm_chr2_88623091_88624060
          Length = 970

 Score = 1102 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattgccaggaatgggtgagagtatgtttggatgcaggggcaagggggagattttagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattgccaggaatgggtgagagtatgtttggatgcaggggcaagggggagattttagggg 260

                                                                       
Query: 61  atttttggaggggaaattaggagaggggataacatttgaaatgtaaataaagaaaatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttttggaggggaaattaggagaggggataacatttgaaatgtaaataaagaaaatgtc 320

                                                                       
Query: 121 taataaatagaataattatattgaaaagatgttgatgctttcatgagtggagatattttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taataaatagaataattatattgaaaagatgttgatgctttcatgagtggagatattttc 380

                                                                       
Query: 181 atgttcaaaggtttttataacatgtcctcaatcactttactgagaatgacagaataataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgttcaaaggtttttataacatgtcctcaatcactttactgagaatgacagaataataa 440

                                                                       
Query: 241 caactatggatactatatgtctttcaggttttatgctaatgtatttcctcaattagtacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caactatggatactatatgtctttcaggttttatgctaatgtatttcctcaattagtacc 500

                                                                       
Query: 301 tttaatcataagtagacagcatcatctttaccataatataaaaagctaaattaaataaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaatcataagtagacagcatcatctttaccataatataaaaagctaaattaaataaaa 560

                                                                       
Query: 361 attcaatgtagctaccacagatttctttttgaaatattgtttatatcccaaatgctgcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attcaatgtagctaccacagatttctttttgaaatattgtttatatcccaaatgctgcct 620

                                                                       
Query: 421 tccccacttacagagtctcttttctattcccttttcccacttctgaaagggtaggacccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccccacttacagagtctcttttctattcccttttcccacttctgaaagggtaggacccc 680

                                                                       
Query: 481 aaattgagaggatggggcattacaatataattttctctagactcctgcatatattatcat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaattgagaggatggggcattacaatataattttctctagactcctgcatatattatcat 740

                                         
Query: 541 tagagtcaaatattccttctggtaatgcag 570
           ||||||||||||||||||||||||||||||
Sbjct: 741 tagagtcaaatattccttctggtaatgcag 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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