BAC Information

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BAC

Clone NameMSMg01-070M04
Chromosome2 (Build37)
Map Location 72,532,212 - 72,532,458
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1631, Itga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960
Downstream geneLOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070M04.T7 (MSMg01no070_m04.b1)MSMg01-070M04.TJ (MSMg01no070_m04.g1)
ACCAG294705AG294706
length896674
length of high quality
(start - end)
44 (104 - 147)247 (108 - 354)
definitionCHROMAT_FILE: MSMg01no070_m04.b1 PHD_FILE: MSMg01no070_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:56 2005CHROMAT_FILE: MSMg01no070_m04.g1 PHD_FILE: MSMg01no070_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNGGAGGGGCTTGGNGGGGGCCCCCCCCCCCCCCCGGCCCCCCGCT
CTTCTTGCTCTTCTATATTTGCGGNNGTCANNNTNNNNNNNNNNNNNAGA
GGATCCGCGGAATTCTTTTATGACCATCGTTTCCAGTGAGAAAAGAGGAT
AGAGGTCTGAGTGCCTCGTTTCTGTTTTGTTCCCCTCGTGTTTCTCCTTC
TCTCCCTTCTCTCTCCTTCCTTCGCTCTGCTTTTTCTTTCTTCTCGCTTT
GCCTCGCTCCCTTTCTTTTTCGTCTCCTTTTTTCCTCTCTTCTCTTTTTC
TTCTTCGTTTTCTCGTCCCTCATCTTCTTCTTTTCTTTTATCCCCCCCTT
TCCTCTCTTTCTCATGTTCGTCCCTCCCCCTTTTCACCCGGGTGTCTCTC
GTCACTTGTGTTCGTCTTTTTCCTGCTTCTTTTCCCCTTCTTCTATTCTT
TTTCCGTTTTTTCCCTTTTCTTTTTTCTCCCCCCATATTTCCTATCTTCT
CTGTTTTTCCTTTGTCCTTTCTTCTTTTTTCTGCCCCTTTCCTTTGTTCT
TTGCCTCTCTTTTTTTCTGCCCCTTTCTTCCCCCCTTTTATCCTTTTTCT
GCTTCTCTCCCCTTTTCTCTTCCTTGTTTCTCTCCGCATTTTTTTTCCCC
GCTTTTTTCCTTCTCTCTTTTTTTTTGTTTACTCCCCCCGTTTTCTTTTT
GTGCTTTCTCGTGCGTGCATCTTCATACTTCCTGCCCCCGTGGATTTCGC
CCTTTTCCTTTTTTTTTCTTATCTTTTTCCCGCCCCTGATTTTATATTCC
CTGTATCTTTGTTCCTTTTGTCTTTTCTTCCCCTTTTTTTTCTTACCTTT
CCTACATCTTTGTCTCCCTCATCCTCCCCTTTTTTCCTTTTTATTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCATGCAATTTCTGCTTTACAGATAGGTGACTAGAGGAAGATCTTA
AACCCTCGGAATTTCTATATGTTTGAAGAAACTTCATGAAATGCTCCATT
TTATCTCTGATGATTATTCTTTGTTCTGGAAGCTCCATTGCTCGACAGTA
AATATAAGTGACTCACCTTCTGTCAAAATGCTATTAGCCTGTAGTATCTA
ACTCTAACAGCATGGGAGAACGTTTAGGAGCTTCTAATTCCTTTGTGTCT
TTATTTACTTATTTCAAACTTTACTTAATTCATCATTTTAGTCATCATTC
TGGTCTCCTGCGAAGGTCTTGAACTTCCTCTATAGCAGAATATGAACCAA
ACCTACATTCTCTTTGGCTTCTAACTGAATTCTGGGATCACAGGCGTGCG
CCATGCCCAGCTATGTGTTTGGTTCCAATTCACATATCCTGATCCTGTGG
TTTGAGTGTGGCCACAAAGGTTTCCTGTGTTAGTGCTTAATCCTCATTGT
GAAGCACTGAGAGGGTGATAGTGTCATTCACCATGTGGGTTTACATTTTG
GCGGAGATTAAGACTAGGTAAGGTCCTCAAGATGCATGGTCTTGAGTTTT
TGTAAGCAAACAAAGCGCCAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_m04.g1 MSMg01no070_m04.g1 CHROMAT_FILE:
MSMg01no070_m04.g1 PHD_FILE: MSMg01no070_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:56 2005
         (247 letters)



>mm_chr2_72532012_72532658
          Length = 647

 Score =  449 bits (232), Expect = e-131
 Identities = 244/248 (98%), Gaps = 2/248 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaatttctatatgtttgaagaaacttcatgaaatgctccattttatctctgatgattat 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 201 ggaatttctatatgtttgaagaaacttcatggaatgctccattttatctctgacgattat 260

                                                                       
Query: 61  tctttgttctggaagctccattgctcgacagtaaatataagtgactcaccttctgtcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttgttctggaagctccattgctcgacagtaaatataagtgactcaccttctgtcaaa 320

                                                                       
Query: 121 atgctattagcctgtagtatctaactctaacagcatgggaga-acgtttaggagcttcta 179
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 321 atgctattagcctgtagtatctaactctaacagcatggg-gacacgtttaggagcttcta 379

                                                                       
Query: 180 attcctttgtgtctttatttacttatttcaaactttacttaattcatcattttagtcatc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attcctttgtgtctttatttacttatttcaaactttacttaattcatcattttagtcatc 439

                   
Query: 240 attctggt 247
           ||||||||
Sbjct: 440 attctggt 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)