BAC Information

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BAC

Clone NameMSMg01-071C17
Chromosome2 (Build37)
Map Location 85,656,265 - 85,786,273
singlet/doubletdoublet
Overlap geneOlfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1
Upstream geneSmtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236
Downstream geneOlfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071C17.T7 (MSMg01no071_c17.b1)MSMg01-071C17.TJ (MSMg01no071_c17.g1)
ACCAG295018AG295019
length714707
length of high quality
(start - end)
127 (53 - 179)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no071_c17.b1 PHD_FILE: MSMg01no071_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:29 2005CHROMAT_FILE: MSMg01no071_c17.g1 PHD_FILE: MSMg01no071_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,656,265 - 85,656,390)(85,785,985 - 85,786,273)
sequence
NTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTACAGAATCCG
CGGAATTCTCTTCTATTTGGCTTAGTGCATCTTTTAACCAGCTGTATTGA
GTCCTTTACAAACTGCCAACTTGGCTCAACAAACTGTATTACCTACTCCA
TGTTTATGTCAGTGGGATGCTGGATTGGTAGGGTAGAGATACGCAGCTTT
GGAAAGAATTGAGCCACAGAGCCTTTTTTTTTAATTAAATCTGTGTACAG
CTTTTGTTATAGTCCATTGATAGTTTATTGCTTTTTCCTACAGTCTCTGG
TTTCCAAGTAATCATGGTTGACCTTCTCTACTTACGGTATGGAGTCAGGA
TTACTGTTCCTGACTTTGGTTCTAATTCTTAGCCTCATAACCAGCTCTTG
TTCCTCTCTTTCTTTGACTTATAGTAATTATTGCCTGATTATTTCATTTC
TTGAAATGACTCTGATACTGAGTCAGCTGTTCTCTTGTCATGAAGCTTCA
AATACCTGCTTTGATATCTCTAGCTATTAACCCTATTAACCAACATACAC
TGGAATCTTACGAAAACCTGAACTTCTCAAGACTTCCTTTTTTTTTTACC
ATGACTCATCTTTTATCCCCTTTATTAATTATCCTCTCTAGAATTTTATA
CAGTTATTTTACTAAAATACTCTAAGGATTTAATTTATTTGTTTCTAATC
CATTTTAATATATC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATTCTTTGATGAGCATTCAATTTAAA
TTAAAATTCTAATATAAAAGTAATTACAATAATAAATATTGGTAGTTTAT
GATATATAAAATAATCAGCATGTTAAAAAACAATTGCCTTCAATCTTTAT
AATATGATTCTGATCCCTAAGAATCACTCACAGCCTAAGGATGCAATAAT
TTTCTCAAAATCATTATTTGTTTGCAACAAAACTCATGGCATGTACACGC
CTATACACATTCACCCCATGCTCATAAATAAATCTAAAATTAATTTAAAT
AATAAAACATAAATAATAATAACAACTTCAGAACTTATGACCATTCTTTA
AAAATCTTCTCTTTGTGTGTATTAGTTATTTCACTTGATTAATGGAAATT
GGTTTATTCTAATTTATATACATATTTATACAAAATTACTCACACACTCA
TATAAATGCTAAGAGAGAATGATAATTATTGATAGAGTCCACTCCCTGAA
ATATTATGTAATGAATATTTACTTATATGTACACAAATTTATATAGATAC
TTATTTTGTCTAAAATCTACCAAATACCTAAACTAAATCAAACTTATTTA
TTACCCACTTTTATTTAAAACATTGTTTCCGAAAAGGTCTACCCACCTTG
TGCGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_c17.b1 MSMg01no071_c17.b1 CHROMAT_FILE:
MSMg01no071_c17.b1 PHD_FILE: MSMg01no071_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:29 2005
         (127 letters)



>mm_chr2_85656065_85656591
          Length = 527

 Score =  228 bits (118), Expect = 8e-65
 Identities = 124/126 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattctcttctatttggcttagtgcatcttttaaccagctgtattgagtcctttacaaa 60
           |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 gaattctcttctatttggtttagtgcatcttttaaccagctttattgagtcctttacaaa 260

                                                                       
Query: 61  ctgccaacttggctcaacaaactgtattacctactccatgtttatgtcagtgggatgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgccaacttggctcaacaaactgtattacctactccatgtttatgtcagtgggatgctg 320

                 
Query: 121 gattgg 126
           ||||||
Sbjct: 321 gattgg 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 527
Length adjustment: 8
Effective length of query: 119
Effective length of database: 519
Effective search space:    61761
Effective search space used:    61761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no071_c17.g1 MSMg01no071_c17.g1 CHROMAT_FILE:
MSMg01no071_c17.g1 PHD_FILE: MSMg01no071_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:29 2005
         (289 letters)



>mm_chr2_85785757_85786445
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattctttgatgagcattcaatttaaattaaaattctaatataaaagtaattacaataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tattctttgatgagcattcaatttaaattaaaattctaatataaaagtaattacaataat 458

                                                                       
Query: 61  aaatattggtagtttatgatatataaaataatcagcatgttaaaaaacaattgccttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 457 aaatattggtagtttatgatatataaaataatcagcatgttaaaaaataattgccttcaa 398

                                                                       
Query: 121 tctttataatatgattctgatccctaagaatcactcacagcctaaggatgcaataatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tctttataatatgattctgatccctaagaatcactcacagcctaaggatgcaataatttt 338

                                                                       
Query: 181 ctcaaaatcattatttgtttgcaacaaaactcatggcatgtacacgcctatacacattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctcaaaatcattatttgtttgcaacaaaactcatggcatgtacacgcctatacacattca 278

                                                            
Query: 241 ccccatgctcataaataaatctaaaattaatttaaataataaaacataa 289
           |||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 277 ccccatgctcataaataaatctaaaaatcatttaaataataaaacataa 229


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)