BAC Information

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BAC

Clone NameMSMg01-071D12
Chromosome2 (Build37)
Map Location 75,208,097 - 75,208,532
singlet/doubletsinglet
Overlap genenone
Upstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423
Downstream geneLOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071D12.T7 (MSMg01no071_d12.b1)MSMg01-071D12.TJ (MSMg01no071_d12.g1)
ACCAG295056AG295057
length698695
length of high quality
(start - end)
436 (64 - 499)---
definitionCHROMAT_FILE: MSMg01no071_d12.b1 PHD_FILE: MSMg01no071_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:33 2005CHROMAT_FILE: MSMg01no071_d12.g1 PHD_FILE: MSMg01no071_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGG
AATTCCNGAATACAATATTCTTGAGTGTTAAGTTTGGGTCCATGGGAGTT
GGGCATAGCACTGCCTTCTACAGAGATTCTTGTACTCCTCTGCCCCAGGA
ATATTAAAGTAAATTGGAAACAACAGCAGTCAGAAAGTCAGCCCAACCCT
GCTCATGTCTGGATTGCTTGACACACTGGGTGGTTTAACACCAGAAAAAC
AGGCCTGTTGTGCACCCCTTGGAAGCAGCGTTAGCAGGGACAATTTCCTG
TGATACAGACCATGTCTACTAGCCCAACCATAGATAGTGCTCCAGAGTGC
TCCTTGACCTCTGTACGTGTCGAACACATCCTTGCTACTCAGTGTTACAG
TTAGAAAATCTGACATGTTACCCATCCCAAAGGAGGACTACCTACCTCTT
CTTCTCTCCACCTCCCCCTACACTCTAGTAAAATTTTGTCTAACTTAACC
TGTGAAGAAATATGGCAACCATGCCTCTGAAAGACAATTCTTTAGGCTTT
TACCATTTCCCAGTTAATAGATGCTTCCTAGCCCCTAGCCTTCAGTCTTT
GATTCCTTCCATCCTCTCTTTTGTGTTTTTAAAATGTTCTTGCCGAAATC
CCTTGTCCAAACCCCTCATAAAACTTTTAACTTTTCCATGGATTCTTC
AATGAAGTGGGAGCGCGGGNAGGCGCCTGTTCGTACCTGCGGGGNGAACN
ANAGATTTACCCGAGCCACGCNNNNNGGCCNGGNNCNCCNGGCNAACNCA
AANNCAGNNACCTGGCCCCGGAAAAAAACGGGCACAACCAACCCCCCCCA
GGAAACGCGGCGGGGGACAACCGAGCCCACGCACCCCGAACCCCACCACG
CAACACCAACAAGGGAAGGAGACCACGNAACGCCACAGCCCCTCTTTTTT
GCANCCCCCCCAGCCCGCGAGCCCACCGGGAACAGGAGCCACACCCGCCC
CGNGCACTTTTTTTTTTTGTTAGGAAAGCAGAGCCNGCCACCAANAAGGA
GGTGTTTCCCCCCCCCTGCATTCAATCAGCATTGTCTAAAGAGGTCATAC
TTCATCCGAACCCTGCAACATCTATCTTGGCAAGATCTGGTAAAGGCTTT
CCCGGTTCCCCTCCCTTATGTATTTTTATCCTCCGCAACTTATTACCCTT
TGCCCCCAGTCCCCCTTCGCAATGATTTGTCTCAGGCTGCTAGTCTAGTG
CCCCAGTTTCCCTGTTGCATAGAAGCTGGATGATTTGGACCAAGTTGACT
CAACCCCCCCCATGCTTTTTACTGAACCATCAGCCTCTTTTTTTTTTTTT
TTCTTTATACCCCAGTCAATCTCGTGAAAACTATCGCTCAGCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_d12.b1 MSMg01no071_d12.b1 CHROMAT_FILE:
MSMg01no071_d12.b1 PHD_FILE: MSMg01no071_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:33 2005
         (436 letters)



>mm_chr2_75207897_75208732
          Length = 836

 Score =  789 bits (408), Expect = 0.0
 Identities = 429/436 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatattcttgagtgttaagtttgggtccatgggagttgggcatagcactgccttctacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatattcttgagtgttaagtttgggtccatgggagttgggcatagcactgccttctacag 260

                                                                       
Query: 61  agattcttgtactcctctgccccaggaatattaaagtaaattggaaacaacagcagtcag 120
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 261 agattcttgtactcctctgccccaggaatattaaagtaaattaaaaacaacagcagtcag 320

                                                                       
Query: 121 aaagtcagcccaaccctgctcatgtctggattgcttgacacactgggtggtttaacacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagtcagcccaaccctgctcatgtctggattgcttgacacactgggtggtttaacacca 380

                                                                       
Query: 181 gaaaaacaggcctgttgtgcaccccttggaagcagcgttagcagggacaatttcctgtga 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaaacaggcctggtgtgcaccccttggaagcagcgttagcagggacaatttcctgtga 440

                                                                       
Query: 241 tacagaccatgtctactagcccaaccatagatagtgctccagagtgctccttgacctctg 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacagaccatgtctacgagcccaaccatagatagtgctccagagtgctccttgacctctg 500

                                                                       
Query: 301 tacgtgtcgaacacatccttgctactcagtgttacagttagaaaatctgacatgttaccc 360
           |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 tacgtggcgaacacatccttgctactctgtgttacagttagaaaatctgacatgttaccc 560

                                                                       
Query: 361 atcccaaaggaggactacctacctcttcttctctccacctccccctacactctagtaaaa 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcccaaaagaggactacctacctcttcttctctccacctccccctacactctagtaaaa 620

                           
Query: 421 ttttgtctaacttaac 436
           ||||||||||||||||
Sbjct: 621 ttttgtctaacttaac 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)