Query= MSMg01no071_l09.b1 MSMg01no071_l09.b1 CHROMAT_FILE:
MSMg01no071_l09.b1 PHD_FILE: MSMg01no071_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:12 2005
(460 letters)
>mm_chr2_38837622_38838482
Length = 861
Score = 812 bits (420), Expect = 0.0
Identities = 447/456 (98%), Gaps = 1/456 (0%)
Strand = Plus / Minus
Query: 3 ggaattcactctgtatacccggctggcctcaaactcagaaacccgcctacctctgcctcc 62
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggaattcactctgtagaccaggctggcctcaaactcagaaacccgcctacctctgcctcc 618
Query: 63 caagtgctgggattaaaggcgtgcaccaccagtgccaggcaaaataaacatgtc-ttttt 121
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 617 caagtgctgggattaaaggcgtgcgccaccagtgccaggcaaaataaacatgtctttttt 558
Query: 122 ttaaaaacaaaaacaaaaaagcatgtcttataaattgaatgtaaatgtttgttgcaggag 181
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tttaaaacaaaaacaaaaaagcatgtcttataaattgaatgtaaatgtttgttgcaggag 498
Query: 182 gcacccgaccacatccaacaaacaatccagggaacaaaatgcacctgaggtaaagatttc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gcacccgaccacatccaacaaacaatccagggaacaaaatgcacctgaggtaaagatttc 438
Query: 242 tctgccctctttcctggagcctccctcaccgttacccagggtcttgttcaccatgggtca 301
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 437 tctgccctttttcctggagcctctctcaccgttacccagggtcttgttcaccatgggtca 378
Query: 302 ttcctttgaccattttccaacaaaccctgccccaaccaaatcccagctgcgggggaaaca 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 377 ttcctttgaccattttccaacaaaccctgccccaaccaaatcccagctgcggggaaaaca 318
Query: 362 gaaaatacaaacacctgctgagtggttttggtcaacttgacacaaactagagtcacccgg 421
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 317 gaaaatacaaacacctgctgagtggtcttggtcaacttgacacaaactagagtcacccgg 258
Query: 422 gaagagtgactcaagtaagggatttcctccatcaaa 457
||||||||||||||||||||||||||||||||||||
Sbjct: 257 gaagagtgactcaagtaagggatttcctccatcaaa 222
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 861
Length adjustment: 10
Effective length of query: 450
Effective length of database: 851
Effective search space: 382950
Effective search space used: 382950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no071_l09.g1 MSMg01no071_l09.g1 CHROMAT_FILE:
MSMg01no071_l09.g1 PHD_FILE: MSMg01no071_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:12 2005
(486 letters)
>mm_chr2_38684974_38685859
Length = 886
Score = 886 bits (458), Expect = 0.0
Identities = 479/486 (98%)
Strand = Plus / Plus
Query: 1 ctaggcaaagtatttcccaactgcatctgtggatacatgtcaagttgaaaacaactcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaggcaaagtatttcccaactgcatctgtggatacatgtcaagttgaaaacaactcagc 260
Query: 61 ggcagtaagaagtaacaggtgtccttgactaatgttgagtgaccggcaaagggcaggtct 120
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 agcagtaagaagtaacaggtgtccttgactaatgctgagtgaccggcaaagggcaggtct 320
Query: 121 gcaacatgaacctttcagaacatgcacagcagtagattttctaaagcaaacaaaatggta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaacatgaacctttcagaacatgcacagcagtagattttctaaagcaaacaaaatggta 380
Query: 181 agagagataacatggtttagtaggctatcttaaaataggcatatctaagatgtgatattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagagataacatggtttagtaggctatcttaaaataggcatatctaagatgtgatattc 440
Query: 241 ccttagctctttactaactccctgaaaataaccagagcgaaggattctgtatcctcatta 300
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 ccttagctcttcactaactccctgaaaataaccagagcaaaggattctgtatcctcatta 500
Query: 301 acatgatgaatctaactaatactaagtaatatgcatcatatacactgttcaacttagact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatgatgaatctaactaatactaagtaatatgcatcatatacactgttcaacttagact 560
Query: 361 aaatagtgggctgggtgcggtgttgcacgccttttatcttagtacttaggaagcagaggc 420
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 561 aaatagtgggctgggtgcggtgtcgcacgccttttatcttagtgcttaggaagcagaggc 620
Query: 421 tgtaggatatctgtgagttcaaggtcagcctcttaagttccagacaattcaaaatacgaa 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtagtatatctgtgagttcaaggtcagcctcttaagttccagacaattcaaaatacgaa 680
Query: 481 caatgg 486
||||||
Sbjct: 681 caatgg 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
