BAC Information

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BAC

Clone NameMSMg01-072E24
Chromosome2 (Build37)
Map Location 117,947,606 - 117,948,095
singlet/doubletsinglet
Overlap geneThbs1
Upstream geneSpred1, LOC624574, 2610510H03Rik, Rasgrp1
Downstream geneFsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072E24.T7 (MSMg01no072_e24.b1)MSMg01-072E24.TJ (MSMg01no072_e24.g1)
ACCAG295886AG295887
length698708
length of high quality
(start - end)
490 (42 - 531)---
definitionCHROMAT_FILE: MSMg01no072_e24.b1 PHD_FILE: MSMg01no072_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:00 2005CHROMAT_FILE: MSMg01no072_e24.g1 PHD_FILE: MSMg01no072_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAACGCGGAATTCAG
TTACTCCTAACACTTACCCTTATGGAGTCGTACCATGCTAAAAGCAATTT
GACTTCAAGCCACTGTCACAGGGAACCATGAGGGCTAGTCAGTATTAGCT
TCAGGTCACACAGTACTGAGATCTTCTGCTTTGGGTTTGGGTCATTAGAC
ATTAGACATTAGACATTAGACATCTTCGATAGCATTTGACCTCACAGAAT
GAGTTTGGATTCCTCAGATTAGAATAACTTTTATAAGCAAATTTCAATGG
CATACAAAATCTCCAAAGCTTAGAGCATAAATGCTGGAAAGAAAACATTC
AGATTTTAGATAAACCGTCCCAAAGCATCTCATACGCACTGAATGCTAAG
CCCTCTGGGAAAATCTATTTTGAAAAAATTCTAGTTTGACTTTATCTGAG
CCAAAAGATAAAATCTTTATGGGATAAATGTAGAAAGCTAAATGCTTTTT
TAAAAAATGTCTCTTACACTTTATGCAGCCAGTCGCACTGACCACTGCCA
GGATTCGAGGCCTGAAGTACAAGTTGACCTGTATTTGATTCACCCACTGC
TGATGTCTCTCTTCCAGCTGGACTCTGACTCAGACCTCATACGGGATACT
TGTGACAACAATCAGGACATCGATGAGGATGGCCTTCAAAACAATCTG
TGAATGGGAAGGCAGCGNGGNGNNGGGCCTTTTCCTATCNGCCAGNNANA
GAAGGATTTTCCNNNCACGCGCGAGNGNNGAGAAGAGGNGAANGGNNGAA
GACAGAAAGGACACGCACCCCACGAGACCCGAGGCACACCCAACACGGGC
CCAGGAGAANAAACAGGAAGGCAGCAGCGCAGGAGNAAAAGAGGCCGAAG
CCAGGCCGGGAACAGGCNACAAACACACAAGCCCGCCCGGCCGAAGCAGG
TTTTTCACAAACCCAAGGCCGGCCCGAGCCCCAGAGCCAGGNACAAGGCA
CCCCCGGGCAACCCGTTTAATCTCTCACCAAAACAAAAACGGCCACGGAC
GCAGCTTTTTTTTTCTCCCCCCCCCGAGTTTTGATCTCAAGCGACCATGT
AAAAAGCTGGACCCGGCCAGTACACTCTCCCAGTCCCAGGGGTTAGGAAA
AAGCGATGGTGGAGCGGCACATATATATACCCACATATACAGAGAAATGC
TCATAGGTATTTCCCACCAATAATTACGCAGCGAGGTTTTCCATCCAGCT
CTGTACAATAACGGACTATCACAAAGAGCTCTACACCAGCCCCCTGATAT
ACCGCACATTACCTCACCCGGGATATTAATAGACAAGCGCCATCTGCCCC
CATTTTTTTTTTTTTTCGAAGACATGGTACCACCCTATACCCCACTGCCA
CCGATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_e24.b1 MSMg01no072_e24.b1 CHROMAT_FILE:
MSMg01no072_e24.b1 PHD_FILE: MSMg01no072_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:00 2005
         (490 letters)



>mm_chr2_117947405_117948295
          Length = 891

 Score =  870 bits (450), Expect = 0.0
 Identities = 480/490 (97%), Gaps = 1/490 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattc-agttactcctaacacttacccttatggagtcgtaccatgctaaaagcaatttg 60
           |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcaagttactcctaatacttacccttatggagtcgtaccatgctaaaagcaatttg 261

                                                                       
Query: 61  acttcaagccactgtcacagggaaccatgagggctagtcagtattagcttcaggtcacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acttcaagccactgtcacagggaaccatgagggctagtcagtattagcttcaggtcacac 321

                                                                       
Query: 121 agtactgagatcttctgctttgggtttgggtcattagacattagacattagacattagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agtactgagatcttctgctttgggtttgggtcattagacattagacattagacattagac 381

                                                                       
Query: 181 atcttcgatagcatttgacctcacagaatgagtttggattcctcagattagaataacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atcttcgatagcatttgacctcacagaatgagtttggattcctcagattagaataacttt 441

                                                                       
Query: 241 tataagcaaatttcaatggcatacaaaatctccaaagcttagagcataaatgctggaaag 300
           ||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 442 tataagcaaatttcaatagcatacaaaatctccaaagcaaagagcataaatgctggaaag 501

                                                                       
Query: 301 aaaacattcagattttagataaaccgtcccaaagcatctcatacgcactgaatgctaagc 360
           |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 502 aaaacattcaaattttagataaaccgtcccaaagcatctcacacgcactgaatgctaagc 561

                                                                       
Query: 361 cctctgggaaaatctattttgaaaaaattctagtttgactttatctgagccaaaagataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cctctgggaaaatctattttgaaaaaattctagtttgactttatctgagccaaaagataa 621

                                                                       
Query: 421 aatctttatgggataaatgtagaaagctaaatgcttttttaaaaaatgtctcttacactt 480
           |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
Sbjct: 622 aatctttatgggataaatgtagaaagctaaatactttttaaaaaaatgtctcttacacat 681

                     
Query: 481 tatgcagcca 490
           ||||||||||
Sbjct: 682 tatgcagcca 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 891
Length adjustment: 10
Effective length of query: 480
Effective length of database: 881
Effective search space:   422880
Effective search space used:   422880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)