BAC Information

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BAC

Clone NameMSMg01-072P11
Chromosome2 (Build37)
Map Location 10,359,808 - 10,538,674
singlet/doubletdoublet
Overlap geneSfmbt2
Upstream geneLOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5
Downstream geneLOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072P11.T7 (MSMg01no072_p11.b1)MSMg01-072P11.TJ (MSMg01no072_p11.g1)
ACCAG296379AG296380
length706706
length of high quality
(start - end)		587 (45 - 631)635 (72 - 706)
definitionCHROMAT_FILE: MSMg01no072_p11.b1 PHD_FILE: MSMg01no072_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:53 2005CHROMAT_FILE: MSMg01no072_p11.g1 PHD_FILE: MSMg01no072_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,359,808 - 10,360,390)(10,538,040 - 10,538,674)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATAGGTGATCCATTTGAGTGTGATCGACTGATGTTTTCCTGTATT
ATAGTCAATAATTGGGAAGTTTTCTCTGTTTGAGTTCATTTTAAAGCCAT
GTACCAGAGTGCCTTCCCATCCCCCTCAAGCCTCAGCTTGCAGGATAACT
TGGGTGGCAGGAGAGGAGTAAGGATAGTCCTGTGCTTACCGTAGTCTCCG
GGAGCCCACTAATAAATAGCGCCATTCATTGCTCATCTCGAGTGCGTAAT
AACTCCATGATCTCTCACATATGTGCTACCCAAGACTATTGATTAGCAAT
CTCCATAAAACAAGAGGAGGTACCACTGACTGTATTAAAGTGTGGCTCAG
GCAGATTTTAGGCATAGGAGCAGAAGAGTTTAACATCAAGTCTTGATGGT
TTGTCTGAAAATGTGATAATGAAACATTAATAATTCTAATATGTACTTGA
ACAGGAAGACAAAGGCAATATGTCGTATGTAATTATTAAATTACCAACTC
TGTCCTAAGGGTACACTGGAAAGGGGAATCCTAAATGAATGATTGGGGAT
AGATGCGGATTTTCATTATTGTTACTAATGGCGGTGTTGTTGCGGATAAA
ATACAGATTTTCATTATTGTTACTATTGTTATTATTATTATTACACTGTC
TTTTCT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTAAAATCTGAGAATAGCTCTAACAAAAG
GAGTTCTCAGTGCAAACAAGGGGAATGAAGAAAGGCTCCTAACTATAAAG
AAAATGCCACAAGGAATCTTCCACCTCTCCATCAAGTAGGGACACCAAGA
AGATATCATCTATGAATCAAGAGGCAGGCCCTCAAGAGACACCAGACTTA
CTGGTGCCTCGGTGTCTTTGCAATGATTAGTTCTTAAAGCGGTCATGTCA
GTGTTGCTTGTAGCTTTGTTTACATCCCCTGTTTTCAGCTCAACAACTTC
AAGGGGGCAGGTGTCAAGGAGTGGTTCCTAGGATTAAGAGTTCACAAACA
TTTTTCTGATACTATTGATATTTTTATGCCCTTGGTCAGAGACAGGAATA
AAAATCAAAAATGCTGGTATCTTTTTAGGAGAAAGTAAATCTCACAACAC
TCAATAGATGGAATACTTTAGCTGAATTAAAAATGTATGTGTGTTGTATG
TGTATGCACACATACACAAAGGTACCTATGGATGTGTGTGCATGTGTATG
AAGACCAGAGGTCAATGCTCATCTTGCCCTCAGTTTTTGCTTACCTTAGT
TTTTGATACAGAGTCTCTCAGTGAATGCATTAGTCTTGACCTCTAGCCAG
AGAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_p11.b1 MSMg01no072_p11.b1 CHROMAT_FILE:
MSMg01no072_p11.b1 PHD_FILE: MSMg01no072_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:53 2005
         (587 letters)



>mm_chr2_10359604_10360590
          Length = 987

 Score = 1073 bits (555), Expect = 0.0
 Identities = 576/583 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccataggtgatccatttgagtgtgatcgactgatgttttcctgtattatagtcaa 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccataggtgatggatttgagtgtgatcgactgatgttttcctgtattatagtcaa 264

                                                                       
Query: 65  taattgggaagttttctctgtttgagttcattttaaagccatgtaccagagtgccttccc 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 265 taattgggaagttttctctgtttgagttcattttaaagccatgtgccagagtgccttccc 324

                                                                       
Query: 125 atccccctcaagcctcagcttgcaggataacttgggtggcaggagaggagtaaggatagt 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 atccccctcaagcctcagcttgcaggataacttgggtggcaggagaggagtaagcatagt 384

                                                                       
Query: 185 cctgtgcttaccgtagtctccgggagcccactaataaatagcgccattcattgctcatct 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 cctgtgcttaccgtagtctccgggagcccactaataagtagcgccattcattgctcatct 444

                                                                       
Query: 245 cgagtgcgtaataactccatgatctctcacatatgtgctacccaagactattgattagca 304
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cgagtgcgtaataactccatgctctctcacatatgtgctacccaagactattgattagca 504

                                                                       
Query: 305 atctccataaaacaagaggaggtaccactgactgtattaaagtgtggctcaggcagattt 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atctccataaaacaagaggagttaccactgactgtattaaagtgtggctcaggcagattt 564

                                                                       
Query: 365 taggcataggagcagaagagtttaacatcaagtcttgatggtttgtctgaaaatgtgata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taggcataggagcagaagagtttaacatcaagtcttgatggtttgtctgaaaatgtgata 624

                                                                       
Query: 425 atgaaacattaataattctaatatgtacttgaacaggaagacaaaggcaatatgtcgtat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgaaacattaataattctaatatgtacttgaacaggaagacaaaggcaatatgtcgtat 684

                                                                       
Query: 485 gtaattattaaattaccaactctgtcctaagggtacactggaaaggggaatcctaaatga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtaattattaaattaccaactctgtcctaagggtacactggaaaggggaatcctaaatga 744

                                                      
Query: 545 atgattggggatagatgcggattttcattattgttactaatgg 587
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atgattggggatagatgcggattttcattattgttactaatgg 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no072_p11.g1 MSMg01no072_p11.g1 CHROMAT_FILE:
MSMg01no072_p11.g1 PHD_FILE: MSMg01no072_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:53 2005
         (635 letters)



>mm_chr2_10537772_10538806
          Length = 1035

 Score = 1205 bits (623), Expect = 0.0
 Identities = 632/635 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaaatctgagaatagctctaacaaaaggagttctcagtgcaaacaaggggaatgaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 903 ttaaaatctgagaatagctctaacaaaaggagttctcagtgcaaacaagaggaatgaaga 844

                                                                       
Query: 61  aaggctcctaactataaagaaaatgccacaaggaatcttccacctctccatcaagtaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 aaggctcctaactataaagaaaatgccacaaggaatcttccacctctccatcaagtaggg 784

                                                                       
Query: 121 acaccaagaagatatcatctatgaatcaagaggcaggccctcaagagacaccagacttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 acaccaagaagatatcatctatgaatcaagaggcaggccctcaagagacaccagacttac 724

                                                                       
Query: 181 tggtgcctcggtgtctttgcaatgattagttcttaaagcggtcatgtcagtgttgcttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tggtgcctcggtgtctttgcaatgattagttcttaaagcggtcatgtcagtgttgcttgt 664

                                                                       
Query: 241 agctttgtttacatcccctgttttcagctcaacaacttcaagggggcaggtgtcaaggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 agctttgtttacatcccctgttttcagctcaacaacttcaagggggcaggtgtcaaggag 604

                                                                       
Query: 301 tggttcctaggattaagagttcacaaacatttttctgatactattgatatttttatgccc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 603 tggttcctaggattaagagttcacaaacatttttctgatactattgatatttttatcccc 544

                                                                       
Query: 361 ttggtcagagacaggaataaaaatcaaaaatgctggtatctttttaggagaaagtaaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttggtcagagacaggaataaaaatcaaaaatgctggtatctttttaggagaaagtaaatc 484

                                                                       
Query: 421 tcacaacactcaatagatggaatactttagctgaattaaaaatgtatgtgtgttgtatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tcacaacactcaatagatggaatactttagctgaattaaaaatgtatgtgtgttgtatgt 424

                                                                       
Query: 481 gtatgcacacatacacaaaggtacctatggatgtgtgtgcatgtgtatgaagaccagagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gtatgcacacatacacaaaggtacctatggatgtgtgtgcatgtgtatgaagaccagagg 364

                                                                       
Query: 541 tcaatgctcatcttgccctcagtttttgcttaccttagtttttgatacagagtctctcag 600
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 363 tcaatgctcatcttgccctcagtttttgcttatcttagtttttgatacagagtctctcag 304

                                              
Query: 601 tgaatgcattagtcttgacctctagccagagagct 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 303 tgaatgcattagtcttgacctctagccagagagct 269


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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