Query= MSMg01no073_a23.b1 MSMg01no073_a23.b1 CHROMAT_FILE:
MSMg01no073_a23.b1 PHD_FILE: MSMg01no073_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:01 2005
(320 letters)
>mm_chr2_53911484_53912203
Length = 720
Score = 543 bits (281), Expect = e-159
Identities = 308/317 (97%), Gaps = 2/317 (0%)
Strand = Plus / Plus
Query: 5 gaattca-agaaatgaaattctagttagactctctgaaccacaggactcagcctccactc 63
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagaaacgaaattctagttagactctctgaaccacaggactcagcctccactc 264
Query: 64 ccaggggtttgaattttgtgactgttgaaaagacttgtctcacagggaggaagttgaagc 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 ccaggggtttgaattttgtgactgttgaaaagacttgtctcacagggaggaagtagaagc 324
Query: 124 tgctgtctttgtatacatacttgaaagtgatggagcatgccccatagtcctggagcataa 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 tgctgtctttgtatacatacttgaaagtgatggagcatgccccatagtcctggaccataa 384
Query: 184 acatgctagtcagaacatatctgtgaagtcatgacttctaccattgcacagaaaaaaaaa 243
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 acatgctagtcagaacagatctgtgaagtcatgacttctatcattgcacagaaaaaaaaa 444
Query: 244 tgaggtttttttttttttcagaatctagaaaggagatttcttaggaatcttataatttac 303
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 tgag-tttttttttttttcagaatctagaaaggtgatttcttaggaatcttataatttac 503
Query: 304 ttccccaaatcacatca 320
||||| |||||||||||
Sbjct: 504 ttccctaaatcacatca 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_a23.g1 MSMg01no073_a23.g1 CHROMAT_FILE:
MSMg01no073_a23.g1 PHD_FILE: MSMg01no073_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:01 2005
(525 letters)
>mm_chr2_54012891_54013813
Length = 923
Score = 926 bits (479), Expect = 0.0
Identities = 512/529 (96%), Gaps = 11/529 (2%)
Strand = Plus / Minus
Query: 6 aattctttcaccatgcatagatggttttaacaagatttgactgaaacttttctcagcaaa 65
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aattctttcaccacgcatagacggttttaacaagatttgactgaaacttttctcagcaaa 744
Query: 66 attaagcacag---------caaacagtgactggactgggctgctccaaggtgaggagca 116
||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 attaagcacagcaaacacttcaaacagtgactggactgggctgctccaaggtgaggagca 684
Query: 117 gcctagtgggttctgcattgtggtatttaaagacatcttctgaacatttatgaattagat 176
|||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 683 gcctagggggttctgcattgtggtatttaaagacatcttatgaacatttatgagttagat 624
Query: 177 gggatatccctgttctttcccaaatcatggtgagtcggatctccctttaaggatattttt 236
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gggataaccctgttctttcccaaatcatggtgagtcggatctccctttaaggatattttt 564
Query: 237 ctcccatgatcttcacacaaaaaagaagaatgtcagtaatattgtaacaaagtcaagtct 296
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 563 ctcccatgatcttcacacaaaaaagaagaatgtcagta--attgtaacaaagtcaagtct 506
Query: 297 tccgaagttttataccctttgttagagtgcatgcagaggcaccctcaaggaggtttaaat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccgaagttttataccctttgttagagtgcatgcagaggcaccctcaaggaggtttaaat 446
Query: 357 acagagggttattctgataacaaagatataactaacaaaatgtagcagtagttttccttg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acagagggttattctgataacaaagatataactaacaaaatgtagcagtagttttccttg 386
Query: 417 gcaactgtatatctagctcattgcctactgggttttctgggtgattgcatttatagactg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcaactgtatatctagctcattgcctactgggttttctgggtgattgcatttatagactg 326
Query: 477 ggagaagggcttctgagaagctagtcttctccacaatttagtctgttac 525
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggagaagggcttctgagaagctagtcttctccacaatttagtctgttac 277
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 923
Length adjustment: 10
Effective length of query: 515
Effective length of database: 913
Effective search space: 470195
Effective search space used: 470195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
