BAC Information

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BAC

Clone NameMSMg01-073L24
Chromosome2 (Build37)
Map Location 74,138,406 - 74,138,607
singlet/doubletsinglet
Overlap genenone
Upstream gene1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
Downstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073L24.T7 (MSMg01no073_l24.b1)MSMg01-073L24.TJ (MSMg01no073_l24.g1)
ACCAG296972AG296973
length715779
length of high quality
(start - end)
92 (156 - 247)198 (127 - 324)
definitionCHROMAT_FILE: MSMg01no073_l24.b1 PHD_FILE: MSMg01no073_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:55 2005CHROMAT_FILE: MSMg01no073_l24.g1 PHD_FILE: MSMg01no073_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTATACGACTCACATATTTCGAGAATCCGCGGAATTCGTT
TTGTATTTCCTTTTTCCATTCTCATTTTACACATTCTTTAAGTTTGGTAT
CATCCCTAATATGGTCCCTTATGTGCGCTCTGCCTTGAAATCTCTAACCT
GCATCTGTTTAAATAGGAAGGCGCGCTTTAAAAGGAAAGGTTTCTTAGAG
GCACCGGTCGCGCCTGTTTACATTTAAATGTATAGGGAAAAAAATGCATC
GAAGATAGAACAGCTCTGCTGAGTCTTCTGAAGACTCTGTGTTTGTGTTC
ATTTGAACACTTACTCTTCTTTCTTTTTTCAGACAAACGTGCCTTTTCTT
ACTTATTTTCTTTGCACGCTATAACAACTACTGACTATTCTTGTTTGCCT
CATCTTGACCCTGTCACCGCATATACATCCATAAGTGTCGTTCCTTGCTT
CCTGCTAACAGCACAGTAGGTTCAAGTTTCAGCTAGATGCCTTACGGTGT
CATTCATAACCCTAATTGAATTACACATACCGTTCATAACGTAGGGCCCT
ATTTCATGCACCACGACTACAACCTTGCTTCTGACTGTCATTACAACTGA
CAGTTTTTATTTACCCCCCTTCCCTATTTATTCCTACTCTCCGTTTCCAC
CTTTCTTCTACCTCACTTTCTCTCCTGCTCCACTTTTCCCTTCCGCTAAA
TATACCCCCTTATTT
TTTTTTTTTCTTTTTTTTTTTTCTCTTTCTTCCTCTNNTNNNATATATAN
NNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAAAATGGAAAATACATCCATT
TCCTAGTACTCCTGACAGCAGAGTGGTTAAGAAAAGTCTTGAAGCAGTTC
AGTGGCTGGACCGCCACCTACTGGTCATTGTTAGTCACAACTGAGCCGTA
GCTTAGGAAAAGAAGGTAAGAAAAAAAATGCCTCGGGCAAGCCCTCTTTC
TAAAGAAAATATTTTAATGCTTACACTGTGGTGAAATGAATGTTTTATAG
GACTAAGAGGATATGATTAGTGCCATTTCATATTCCTCTACATGTTTTGG
TAGTTTATGGAGGTCACATTGCTTAATATACCAGTTTCACAGTGTTCCAA
AAACGTCTATCATATGCAGGCCGTTTCACTCTGGTCAAACAGACTACCGT
CGCGGAAATTTATCAAAATGTATTTCAAACACAAACGCACCAATTCCGAA
CGTGTCATCTTGCAACTCCCGTGCCCCATGTCTTGATAACAGAGAAGGTC
TTTGCCCTCAATCCCTTCCGTCTAACAATCCTCTGTTAACTTTTACAAAA
TATCCCTTCTCATTCTTTCCTCTCATCATCGACATTTCTTCCTTATCTCC
CCCTTTCTTTTCTGAAGTATCCTCGAATTGCCCTAATCTTTGTTCTCGCA
CCTTCCTAACCTCACTCTTTGCCACCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_l24.g1 MSMg01no073_l24.g1 CHROMAT_FILE:
MSMg01no073_l24.g1 PHD_FILE: MSMg01no073_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:55 2005
         (198 letters)



>mm_chr2_74138206_74138807
          Length = 602

 Score =  350 bits (181), Expect = e-101
 Identities = 196/203 (96%), Gaps = 6/203 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaaatgg-aaaatacatccatttcctagtactcctgacagcagagtggttaagaaaa 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tttaaaatggaaaaatacatccatttcctagtactcctgacagcagagtggttaagaaaa 343

                                                                       
Query: 60  gtcttg----aagcagttcagtggctggaccgccacctactggtcattgttagtcacaac 115
           ||||||    ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 342 gtcttgaagcaagcagttcagtggctggaccgccacctactggtcattgttagccacaac 283

                                                                       
Query: 116 tgagccgtagcttaggaaaagaaggtaagaaaaaaaatgcctcgggcaagccctctttct 175
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 282 tgagccgtagcttaggaaaagaaggtaag-aaaaaaatgcctcgggcaagccctctttct 224

                                  
Query: 176 aaagaaaatattttaatgcttac 198
           |||||||||||||||||||||||
Sbjct: 223 aaagaaaatattttaatgcttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 602
Length adjustment: 8
Effective length of query: 190
Effective length of database: 594
Effective search space:   112860
Effective search space used:   112860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)