Query= MSMg01no073_m23.b1 MSMg01no073_m23.b1 CHROMAT_FILE:
MSMg01no073_m23.b1 PHD_FILE: MSMg01no073_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:59 2005
(327 letters)
>mm_chr2_62871780_62872505
Length = 726
Score = 578 bits (299), Expect = e-169
Identities = 317/323 (98%), Gaps = 1/323 (0%)
Strand = Plus / Minus
Query: 5 gaattctgttgttttctgtaaataaagtattctagtttcaagattagaaatggaaataat 64
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattctgttgttttctgtaaatacagtattctagtttcaagattagaaatggaaataat 467
Query: 65 tcaaatgtttatcatcatgcatacccataatacttcaggttatagaaagccagtttgtaa 124
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tcaaatgtttatcatcatggaaacccataatacttcaggttatagaaagccagtttgtaa 407
Query: 125 agattgcctgatgcagtcttatatccttttcaaaactgtttttgagaggcaatttaaaaa 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 406 agattgcctgatgcagtcttatatcctttttaaaactgtttttgagaggcaattt-aaaa 348
Query: 185 aattagaaggttatatgtgatataaataagctcggtagtcctcttgccacaaagcaggaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aattagaaggttatatgtgatataaataagctcggtagtcctcttgccacaaagcaggaa 288
Query: 245 atgtgacactaccagatgcaaagcctacggtttctttatcaagttcccagtgacattctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 atgtgacactaccagatgcaaagcctacggtttctttatcaagttcccagtgacattctt 228
Query: 305 cacaatattttctctttatatgt 327
|||||||||||||||||| ||||
Sbjct: 227 cacaatattttctctttagatgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 726
Length adjustment: 9
Effective length of query: 318
Effective length of database: 717
Effective search space: 228006
Effective search space used: 228006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_m23.g1 MSMg01no073_m23.g1 CHROMAT_FILE:
MSMg01no073_m23.g1 PHD_FILE: MSMg01no073_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:59 2005
(578 letters)
>mm_chr2_62737870_62738852
Length = 983
Score = 988 bits (511), Expect = 0.0
Identities = 577/633 (91%), Gaps = 55/633 (8%)
Strand = Plus / Plus
Query: 1 atctccatgatgccccagcttttatagaccttgattcttagccataacccaatgtttgtg 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 atctccatgatgccccaacttttatagaccttgattcttagccataacccaatgtttgtg 210
Query: 61 tgtcacagcacttaatgtcatggtgtttcttatcaagtacagtgtgatattctctaccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tgtcacagcacttaatgtcatggtgtttcttatcaagtacagtgtgatattctctaccca 270
Query: 121 aattctgtatatatatatatatat------------------------------------ 144
||||||||||||||||||||||||
Sbjct: 271 aattctgtatatatatatatatatgtatatgtatatatatatatatatatacatatacat 330
Query: 145 ------atacacacacacacatacatacatatatacatacatacatacatacat------ 192
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 atatatatacacacacacacatacatacatatatacatacatacatacatacatacatac 390
Query: 193 --ttgatctttagcactttgttattagaactatgtatgacatcatgaataatgcattgtt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atttgatctttagcactttgttattagaactatgtatgacatcatgaataatgcattgtt 450
Query: 251 gatgaggtcttaccttgataacactatataatttatttgaatttttt-ggagttcactga 309
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 451 gatgaggtcttaccttgataacactatataatttatttgaatttttttggagttcactga 510
Query: 310 gttttctaaagttattttcaacaactggcatgaaaattagcaatctcattagcagtttct 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gttttctaaagttattttcaacaactggcatgaaaattagcaatctcattagcagtttct 570
Query: 370 tattttgtaaaataatttattatcaagagaatatttgccagatggtaacagatata---- 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tattttgtaaaataatttattatcaagagaatatttgccagatggtaacagatatagata 630
Query: 426 ttctgatgtatttgaataaaattttctttattttttaagcaggttatttttcttctctgt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ttctgatgtatttgaataaaattttctttattttttaagcaggttatttttcttctctgt 690
Query: 486 gggattctagtcataatttcaaataagggtgattattatagttttatataatacattaaa 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gggattctagtcataatttcaaataagggtgattattatagttttatataatacattaaa 750
Query: 546 ttataaaaaaaacctacagaatatcttgaatgg 578
|||||||||||||||||||||||||||||||||
Sbjct: 751 ttataaaaaaaacctacagaatatcttgaatgg 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 983
Length adjustment: 10
Effective length of query: 568
Effective length of database: 973
Effective search space: 552664
Effective search space used: 552664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
