Query= MSMg01no074_f13.b1 MSMg01no074_f13.b1 CHROMAT_FILE:
MSMg01no074_f13.b1 PHD_FILE: MSMg01no074_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:41 2005
(371 letters)
>mm_chr2_54787053_54787824
Length = 772
Score = 600 bits (310), Expect = e-176
Identities = 354/372 (95%), Gaps = 9/372 (2%)
Strand = Plus / Plus
Query: 5 ggaattcatttcttacc---aaatttttaaagtacaatataaataaggaactaatggagg 61
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcatttctta--tagaaatttttaaagtacaatataaataaggaactaatggagg 262
Query: 62 aaggaaatgtattatcaggaattatgtgaggcttgcattaacaatgtgagtgattgcaga 121
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 263 aaggaaatgtattatgaggaattatgtgaggcttgcattaacaatgtgagtgattggaga 322
Query: 122 tcgttggaaaaatgtgaactgaattaatgctcagtgaccatcatgggtgtcaaataatgc 181
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 323 tcgttggaaaaatgtgcactgaattaatgctcagtgaccaccatgggtgtcaaataatgc 382
Query: 182 tagggcagtctaagaggcctttcttcttcagtctctgacaattgaatgaaatgaactgac 241
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 tagggcagtctaagaggcctttcgtcttcagtctctgacaattgaatgaaatgaactgac 442
Query: 242 aagaaaagagggcatataaacacattaatatgcaagaggggtgaaacctcacaggactgt 301
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 443 aagaaaagagggcatataaacacattaatatgcaagaggagtgaaacctcacaggactgt 502
Query: 302 gaacctgcaataattccttatgatttgta--ccactccataccattttttataggagatg 359
||||||||||||| ||| ||||||||| | || |||||||||||||||||||||||||
Sbjct: 503 gaacctgcaataagtccatatgatttgaaaacc--tccataccattttttataggagatg 560
Query: 360 tgggacagtaaa 371
||||||||||||
Sbjct: 561 tgggacagtaaa 572
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 772
Length adjustment: 9
Effective length of query: 362
Effective length of database: 763
Effective search space: 276206
Effective search space used: 276206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no074_f13.g1 MSMg01no074_f13.g1 CHROMAT_FILE:
MSMg01no074_f13.g1 PHD_FILE: MSMg01no074_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:41 2005
(518 letters)
>mm_chr2_54876565_54877483
Length = 919
Score = 849 bits (439), Expect = 0.0
Identities = 501/523 (95%), Gaps = 6/523 (1%)
Strand = Plus / Minus
Query: 1 tttgaggac-acaaagctcttcttgggtcttgctggtcttatctcaaggataagcagaat 59
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tttgaggacaacaaagctcttcttgggtcttgctggtcttatctcaaggataagcagaat 553
Query: 60 cctagaaactcaatggccaccagagtcacattcaatcagtggctcccaggtttattttct 119
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 552 cctagaaactcaatggccaccagagtcacattgagtcagtggctcccaggtttattttct 493
Query: 120 cataattgggaagaataactgcggactgaagaaggtgggcaagaaagcaaaaaggaagag 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 492 cataattgggaagaataactgcggactgaagaaggtgggcaagcaagcaaaaaggaagag 433
Query: 180 caacagatccttgaagcagggacacgccttgaaaatgagttaccaagaagcttttgggtc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 caacagatccttgaagcagggacacgccttgaaaatgagttaccaagaagcttttgggtc 373
Query: 240 taggcattttataccatgggaactggctggtagggtcccaccaacagttaggttaggcaa 299
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 372 taggcattttataccatgggaactggctgatagagtcccaccaacagttaggttaggcat 313
Query: 300 ttagtttcgattaatttgtttgatttgaatccatgtgcagaacccggtcaatgggataag 359
|||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct: 312 ttagtttcgattaatttgttcaatttgaatccatgtgcagaatctggtcaatgggataag 253
Query: 360 tcaacttacaaagaaaacccaggggcaggcagtcctccaagaatgttccagatgtgtgt- 418
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 252 tcaacttacaaagaaaagccaggggcaggcagtcctccaagaatgttccagatatgt-tc 194
Query: 419 --g-tgtgtacatgtgtgtgtatgtgtggctgtgcttccgtgtgtatctgtctctctctg 475
| | | |||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 193 cagatatatacatgtgtgcgtatgtgtggctgtgcttctgtgtgtatctgtctctctctg 134
Query: 476 tctctgtctttctgtctctgtctctcgatttcttgctctctgt 518
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tctctgtctttctgtctctgtctctcgatttcttgctctctgt 91
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 919
Length adjustment: 10
Effective length of query: 508
Effective length of database: 909
Effective search space: 461772
Effective search space used: 461772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
