BAC Information

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BAC

Clone NameMSMg01-074G19
Chromosome2 (Build37)
Map Location 58,173,250 - 58,173,538
singlet/doubletsinglet
Overlap geneAcvr1c
Upstream geneGpd2, LOC271788, Galnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926
Downstream geneLOC667062, Acvr1, LOC674940, Upp2, BC062650, Pkp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074G19.T7 (MSMg01no074_g19.b1)MSMg01-074G19.TJ (MSMg01no074_g19.g1)
ACCAG297484AG297485
length718715
length of high quality
(start - end)
372 (40 - 411)290 (70 - 359)
definitionCHROMAT_FILE: MSMg01no074_g19.b1 PHD_FILE: MSMg01no074_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:47 2005CHROMAT_FILE: MSMg01no074_g19.g1 PHD_FILE: MSMg01no074_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GTATCTCTGCCTCTAGGCCTTCTGAGGCAGGAGAATAAACAAACAAACTA
ACAAATACTCCAAGCAACCAAGCCAGCAAACAAACAAAAAATAGGCTCTC
CTATACTATAGCACTATTATTTAGATTTGTTTCATCATTGAAAAAATATT
GATAGTAGTACCAATTTCAAAAGGTCATGGTGGTTAAATGAGATCATGCC
AATAAAGCAACTATTTTTTGCCTGCTGTGTAAGGAGTACACTCACTACTG
TTTTTTGGTTCCTTTTCAGTGGAAATAAATTTCCTTTTTTTAAAAGATTT
ATTTATTTATTTTATGTATATGAGTACACTGTAGTAGTACAGATGGTTGT
GAGCCTTTATGCCACTGTTAGGAATTGAATTTTTGGACCGATGCTCAATC
CAGTCAACCCGGCTCACTCTGGTCAGCCCCTCCCGCCCACTTGCTCCAAT
CAACCCCACTCTGTTTAGTCCAAAGATTTATTTCTTCTTATACTTAAGCA
TACTGCTGCTGCTGTCACACTCCCTAAAAAAGGCCCTCACATCCTCTTTA
TTGGCGTCTGCGATCCACCCTGCGCTCCGTTGTTCCTCTTTCCTTCTAAT
CCTTGCTCGCACCTCCTTTTTGTCTCTTCTTTTTTTCCTCTCTTCCCCTT
CTGCTTTCCCTTTTCCCA
TGCTGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCTGCCTCAGCCTCCCAAGGGCTTGGACTA
TAGGTACATACAACCATCACCTGGCTTTGCCTTCCTTACTGGTAAGGAGA
AAACAAGACTTAAAAAGAAAACAGTGTTAAAGAAATATGGCCAACAGAAA
CGCATCGCTTTGACCTAAAGGGCTTTTAATACAAACTCGTCACAGAGAAA
CTCTATTTGTTGGGCTATCTGTGAGAAAATGTTCTTTTGTTCAATGTGGC
AGTTATACCTCTAACTCAGGAAGCCATGCCCTGCTTGCTCAGAAGCAGTG
CAATACCTGTCTAGAGGCACCCCACCCGGGAAGTCTGATTTAACTTCTAG
CCATGAGGCTCACGAAGAGCACAACGCACTGACCATTTGGAGTTCCTCAG
TGGAAACATGGTATTTAATAAAATGTGATTAACTGCTAGGACTCAGGCCT
TAGTCAAATTTCTTAGTCTCTTCCAGACCCCAAACAGAGGTCCTGGTTTC
TGTTGCTCTGAGCTTGCATCATTATCTCGGTGTAAGGGCCTTAGCAATTC
TTATCTGCCATGCAGAGGAAGACAGCACTGATGCTGAAAATTATGTGCAC
CCCCCGAATGCATGGTTGATTCTCTCACATCACACTAATGTTTCTTCCCC
CGCGAAACCCCTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_g19.g1 MSMg01no074_g19.g1 CHROMAT_FILE:
MSMg01no074_g19.g1 PHD_FILE: MSMg01no074_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:47 2005
         (290 letters)



>mm_chr2_58173049_58173738
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%), Gaps = 1/290 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgcctcagcctcccaagggcttggactataggtacatacaaccatcacctggctttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 202 tcctgcctcagcctcccaagggcttggactataggtacatacaaccat-atctggctttg 260

                                                                       
Query: 61  ccttccttactggtaaggagaaaacaagacttaaaaagaaaacagtgttaaagaaatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttccttactggtaaggagaaaacaagacttaaaaagaaaacagtgttaaagaaatatg 320

                                                                       
Query: 121 gccaacagaaacgcatcgctttgacctaaagggcttttaatacaaactcgtcacagagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaacagaaacgcatcgctttgacctaaagggcttttaatacaaactcgtcacagagaa 380

                                                                       
Query: 181 actctatttgttgggctatctgtgagaaaatgttcttttgttcaatgtggcagttatacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actctatttgttgggctatctgtgagaaaatgttcttttgttcaatgtggcagttatacc 440

                                                             
Query: 241 tctaactcaggaagccatgccctgcttgctcagaagcagtgcaatacctg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaactcaggaagccatgccctgcttgctcagaagcagtgcaatacctg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)