BAC Information

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BAC

Clone NameMSMg01-074I05
Chromosome2 (Build37)
Map Location 88,284,282 - 88,284,567
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181
Downstream geneOlfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074I05.T7 (MSMg01no074_i05.b1)MSMg01-074I05.TJ (MSMg01no074_i05.g1)
ACCAG297551AG297552
length704708
length of high quality
(start - end)		431 (45 - 475)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no074_i05.b1 PHD_FILE: MSMg01no074_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:54 2005CHROMAT_FILE: MSMg01no074_i05.g1 PHD_FILE: MSMg01no074_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGATGACTACTGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGACATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTTCATTGTTGGTGGG
ATTGCAGGCTTGTACAAGCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACAGGAGGATCCAGCAATTCCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACTGGCAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGCACATCTACACAATGGA
GCACTACTCTGCTATTACCAAGAATGAATTTATGAAATTCCTAGGCTAAT
GGATGGACCTGCAATTGTTCTTCCTGAGTGAGGTAACATTTTCTCAATGG
AACTCACCCAATATGTACTCTTTGACCCGTGGATATTATCCCCCTTACCA
GGATTCCTTTGATTTAATATATTATTTGCTTCCCCCTTGCTTCTTCCCTA
TGAC

ATCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGAAAAAGATATAAAATGGCTAT
CAATCATGAAATGTATATATCTCTCGTATGTTGTTAGGCAAGTAAGTGAC
CTCCACTAAAACTGAAGCAAACAGGTTTTAGGGGGAAAGAGTGAGCCTAG
AAAAGCACATAAATATATGAATGTAGAAAGTAAAATATAGAGAAGATAAG
CTATAATAGAACAAGGAATTTGGGACAAATGAAGGCAATGGAATACATGT
AACATAAAAACAGACAATTTAAAGGAAAGGAACCAGATATTACTATTATT
ATGCTAAGGAATTATTATTTTCCCCCGCCCCCCAATGACACAATTGCTAT
ATTGGTAAATCAGTGTATCACCCAGCCTTAATACAAAGAAGTTTCCTCTT
ATAGTAGATGGCAATTAAAAAAGAATCCTACAATTTAACATTGTGTCAGA
GTGAGAGACTTTGGAACACTCAGCATTACATGGAATGCGCTTATTAAACT
GCTCCCCGTAAGGCTTAGCATCTGTCCTGAAGAAGACTTTTATAAGCTTT
AACAGCCATAGATGGAACACGATGCTTAAAAAAATCACCCACTCTGAAAC
CATCGAGCTGATATTTTACCGAAGTCCCTGATAGCATGAGAGCCAGTCCC
CACCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_i05.g1 MSMg01no074_i05.g1 CHROMAT_FILE:
MSMg01no074_i05.g1 PHD_FILE: MSMg01no074_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:54 2005
         (286 letters)



>mm_chr2_88284082_88284767
          Length = 686

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%), Gaps = 2/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaaaa-agatataaaatggctatcaatcatgaaatgtatatatctctcgtatgttgt 59
           |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tttgaaaatagatataaaatggctatcaatcatgaaatgtatatatctct-gtatgttgt 259

                                                                       
Query: 60  taggcaagtaagtgacctccactaaaactgaagcaaacaggttttagggggaaagagtga 119
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taggcaattaagtgacctccactaaaactgaagcaaacaggttttagggggaaagagtga 319

                                                                       
Query: 120 gcctagaaaagcacataaatatatgaatgtagaaagtaaaatatagagaagataagctat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcctagaaaagcacataaatatatgaatgtagaaagtaaaatatagagaagataagctat 379

                                                                       
Query: 180 aatagaacaaggaatttgggacaaatgaaggcaatggaatacatgtaacataaaaacaga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatagaacaaggaatttgggacaaatgaaggcaatggaatacatgtaacataaaaacaga 439

                                                          
Query: 240 caatttaaaggaaaggaaccagatattactattattatgctaaggaa 286
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caatttaaaggaaaggaaccagatattactattattatgctaaggaa 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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