BAC Information

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BAC

Clone NameMSMg01-075I11
Chromosome2 (Build37)
Map Location 99,336,286 - 99,336,815
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042886
Downstream geneLOC621386, LOC668702, LOC100042907, LOC241572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075I11.T7 (MSMg01no075_i11.b1)MSMg01-075I11.TJ (MSMg01no075_i11.g1)
ACCAG298322AG298323
length703705
length of high quality
(start - end)
372 (52 - 423)530 (79 - 608)
definitionCHROMAT_FILE: MSMg01no075_i11.b1 PHD_FILE: MSMg01no075_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:13 2005CHROMAT_FILE: MSMg01no075_i11.g1 PHD_FILE: MSMg01no075_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTGTTTATTTCACGAGCCCATTTTTTAATTGGGTTATTTGG
TTTTCTAGAGTCTAACTAACTTTTTGAGTTAGTGAAGATCTTTTTCTGAT
CTGTATGTTGCCATTTTGTCTAATTGACAGTGTCTTTACAAAAGCTTTTC
AATTTTATGAGATTCCATTTGTTAATTTTTGATCTTAGAACCTGAGCCAT
TGGTGATCTGTTCAGATAACTTTTCCCAGTGCCAATACATTTAAGGCTAT
TTCCAACTTTCTCTTCTATTAGTTTCATTGTATCTGGTTTTATGTGGACA
TCCTCAATCCAATTGGACTTGAACTCTGTATAGTGATAAGTATGGATCAA
TTTTTATTCTTTTACATGCAGACTACCAGTTAGCTCAGACCCATTTTTTG
AAGATGCTGTCTTTATTCCACTGTATATTTTTGGCTTTGCTGTCAGAGAT
CAAGAGTCCATAGGTATGTGTGTTTATTTCTGGGTCTTTTATTGTATTCC
ATTGATAGTCCTGTCTTTACTCCTACCAATACCATAAAATTTTCATCATT
ATTACCCGCTTCTACAGTTTGAGGTCATGTACGCCGAATTTCTAAAGAAG
TTCTTTCATTGCTCAGAACTTTTTTCAGTTATCCTTGCTTTTTTGTTACT
CCG
NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGACAGGGGACCAGGAATAG
GGGTAACATTTGGAATGTAAATAAATAGAATTATTTAAAATACATAAACA
AAAGCAATAAAATGTGTTATCATTACAACCACAGATACAAGATAAAAAAA
TAAGTATAGGTAAAGTTTGATTTAGAATGACTATGCAGATATATATTCTA
CATAAATTATAACTGTATTTATTTTTGAAATTATAGCTTCATAATTATTA
ACATAAAATAATAATATTGTGTATTATACATGTATAGTATATTAACCTAA
TTTATCTTATAAGTATGTATGAGGCAACAATACAGATTCCAGTTTCTCGT
GGCCTCAATTTATTCATTAGGATATGTTCATTCATGTAAAGTGATTACTA
ACCACTTTCCTTTTTTTTTTAATCTTTAGTAAACCATTTAATAGACTTTT
ATTTCATGGTGTATTTTAGAGGCTATCTATAATATTAGCATTGCATAAAG
GATTTAATTAAAAATAAAATCCAATTCATTTCTTGAAGTTTGCAGAGTGA
ATTTTAAGAACTTATACAAAACACAATGCTGCTCAGTTTTTGCCAACAGC
CAACAATGTATTGAAGGCCATTAAACTTTGAGTCATGAGATACAGCCATG
CATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_i11.g1 MSMg01no075_i11.g1 CHROMAT_FILE:
MSMg01no075_i11.g1 PHD_FILE: MSMg01no075_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:13 2005
         (530 letters)



>mm_chr2_99336086_99337015
          Length = 930

 Score = 1002 bits (518), Expect = 0.0
 Identities = 527/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagacaggggaccaggaataggggtaacatttggaatgtaaataaatagaattatttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagacaggggaccaggaataggggtaacatttggaatgtaaataaatagaattatttaa 260

                                                                       
Query: 61  aatacataaacaaaagcaataaaatgtgttatcattacaaccacagatacaagataaaaa 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 aatacataaacaaaagcaataaaatgtgttatcattacaacaacagatacaagataaaaa 320

                                                                       
Query: 121 aataagtataggtaaagtttgatttagaatgactatgcagatatatattctacataaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataagtataggtaaagtttgatttagaatgactatgcagatatatattctacataaatt 380

                                                                       
Query: 181 ataactgtatttatttttgaaattatagcttcataattattaacataaaataataatatt 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataactgtatttagttttgaaattatagcttcataattattaacataaaataataatatt 440

                                                                       
Query: 241 gtgtattatacatgtatagtatattaacctaatttatcttataagtatgtatgaggcaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtattatacatgtatagtatattaacctaatttatcttataagtatgtatgaggcaac 500

                                                                       
Query: 301 aatacagattccagtttctcgtggcctcaatttattcattaggatatgttcattcatgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatacagattccagtttctcgtggcctcaatttattcattaggatatgttcattcatgta 560

                                                                       
Query: 361 aagtgattactaaccactttccttttttttttaatctttagtaaaccatttaatagactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtgattactaaccactttccttttttttttaatctttagtaaaccatttaatagactt 620

                                                                       
Query: 421 ttatttcatggtgtattttagaggctatctataatattagcattgcataaaggatttaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatttcatggtgtattttagaggctatctataatattagcattgcataaaggatttaat 680

                                                             
Query: 481 taaaaataaaatccaattcatttcttgaagtttgcagagtgaattttaag 530
           |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 taaaaataaaatccaattcatttcttgaagtttgtagagtgaattttaag 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)