BAC Information

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BAC

Clone NameMSMg01-075K20
Chromosome2 (Build37)
Map Location 86,198,761 - 86,199,358
singlet/doubletsinglet
Overlap genenone
Upstream geneGA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056
Downstream geneOlfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075K20.T7 (MSMg01no075_k20.b1)MSMg01-075K20.TJ (MSMg01no075_k20.g1)
ACCAG298436AG298437
length760719
length of high quality
(start - end)		340 (41 - 380)598 (69 - 666)
definitionCHROMAT_FILE: MSMg01no075_k20.b1 PHD_FILE: MSMg01no075_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:24 2005CHROMAT_FILE: MSMg01no075_k20.g1 PHD_FILE: MSMg01no075_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAATTCTTT
GTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGT
CCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAT
TTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTT
ATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCC
ATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCAAGAAAGA
GAGACCCTTGGTCCTGCGAATATCATATGCCCCAGTACAGGGGGGTGCCA
GGAAGCAGGAGTGGGTGTGCTGAGGAGCAGGGTTGGTCAGCCCATATTAT
TTTCTTTTTCCCCCCCCCCCTTCCCCCTTTTTTTCCCCCTTTTCCCCCTT
TCTTTTTATTCTCCCCCCCTCCCTTTCCTCCTACCTCCTTCTCCCTCTAC
CTTCCATTCATTCCTCTCTTNTTCCTTTTTTTTCTCTCCCCCACTTTCCC
ATCTATTCCCCTTTTTTTTCCCCTCCCTTTTCCCCTCCTCTTTTTCCCCC
CCTTTCTCTTATACACCCTCCCCCTCACTCTCCNGGTTTTTTTTTCCATC
CCCTTCCCCTCTCCCCTCTCCCCCTCCCCTACCTTTTTTTCACCTCCCCT
TCTCCTTTTTTTCCCTCCATTATTTCGCCTCTCTTCTCTCCTCTCTCCTC
ACTTTTTTCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGGACTTCAATATTCTCTAAATGGAAATTTTA
GTTAAGTGGAAAAAGGTTATAAATTTTCCTATCTAAGTTGGCAAGGGTGC
TATGTTCCTGGCTCCTACTCCTTAAGGATATAAAACTGCCCATATATTTA
AATTAAATTATTTGTAAAGCTTCATGATGTACCTTTAAAATAAGTGATAT
GTCTGTAATTTGTGATATTAAAATCAAAATATTCTAAATTATCTTCAAAT
TTCAATCATTTTAATGGTACCAATTTTATGCTACTTCTTTCCTTCATTCA
AACCTTGTCCTATAACCACACCATTATTTGTCAAACACATTGCCTCATTT
TTCACTAATTGTTAATGCACGGATATATGTGAGGGATCCTTTTAGTCAAT
AGTTCACACCCTTTCAATTCTGTAATCACCAAATTAGTAGCCTTATTCAG
TGACATGGCTTCTTTCAGTTTTAAACTATCTGAAAATGTGACGTATTTTT
GTTTCATGCATGTCACTCACTATATTAAACTCTATTTTGCTTCACATTGC
TACAATCAGTACAAAAGGATCAATATATTCTCCTTCTAACAAGATATTGA
TATATCATCTTTGTAGAATTTGCCAATGAATGTGATGTTTATATACAAAA
ATGTAACAATAACCACAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_k20.g1 MSMg01no075_k20.g1 CHROMAT_FILE:
MSMg01no075_k20.g1 PHD_FILE: MSMg01no075_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:24 2005
         (598 letters)



>mm_chr2_86198561_86199558
          Length = 998

 Score = 1118 bits (578), Expect = 0.0
 Identities = 593/598 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggacttcaatattctctaaatggaaattttagttaagtggaaaaaggttataaattttc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tggacttcaatattctctaaatggaaattttagttaagtggaaataggttataaattttc 260

                                                                       
Query: 61  ctatctaagttggcaagggtgctatgttcctggctcctactccttaaggatataaaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatctaagttggcaagggtgctatgttcctggctcctactccttaaggatataaaactg 320

                                                                       
Query: 121 cccatatatttaaattaaattatttgtaaagcttcatgatgtacctttaaaataagtgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccatatatttaaattaaattatttgtaaagcttcatgatgtacctttaaaataagtgat 380

                                                                       
Query: 181 atgtctgtaatttgtgatattaaaatcaaaatattctaaattatcttcaaatttcaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtctgtaatttgtgatattaaaatcaaaatattctaaattatcttcaaatttcaatca 440

                                                                       
Query: 241 ttttaatggtaccaattttatgctacttctttccttcattcaaaccttgtcctataacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttaatggtaccaattttatgctacttctttccttcattcaaaccttgtcctataacca 500

                                                                       
Query: 301 caccattatttgtcaaacacattgcctcatttttcactaattgttaatgcacggatatat 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 501 caccattatttgtcaaacacattgcctcatttttcactaattattaatgcatggatatat 560

                                                                       
Query: 361 gtgagggatccttttagtcaatagttcacaccctttcaattctgtaatcaccaaattagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgagggatccttttagtcaatagttcacaccctttcaattctgtaatcaccaaattagt 620

                                                                       
Query: 421 agccttattcagtgacatggcttctttcagttttaaactatctgaaaatgtgacgtattt 480
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 agccttattcagtgacatggcttctttcagttttcaactatctgaaaatgtgacgtattt 680

                                                                       
Query: 481 ttgtttcatgcatgtcactcactatattaaactctattttgcttcacattgctacaatca 540
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 ttgtttcatgcatgtcactcactatattaagctctattttgcttcacattgctacaatca 740

                                                                     
Query: 541 gtacaaaaggatcaatatattctccttctaacaagatattgatatatcatctttgtag 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtacaaaaggatcaatatattctccttctaacaagatattgatatatcatctttgtag 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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