BAC Information

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BAC

Clone NameMSMg01-075P02
Chromosome2 (Build37)
Map Location 35,987,612 - 35,988,113
singlet/doubletsinglet
Overlap geneRbm18
Upstream geneRab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6
Downstream geneLOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075P02.T7 (MSMg01no075_p02.b1)MSMg01-075P02.TJ (MSMg01no075_p02.g1)
ACCAG298638AG298639
length688660
length of high quality
(start - end)
533 (54 - 586)501 (58 - 558)
definitionCHROMAT_FILE: MSMg01no075_p02.b1 PHD_FILE: MSMg01no075_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:44 2005CHROMAT_FILE: MSMg01no075_p02.g1 PHD_FILE: MSMg01no075_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGGGGAGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAATACCCTACTGTCATAAATGGACAGATCATGGAAAC
ACCAACTAAATGGAGACACATTTAAACTAACAGAAGTTATGAACTTTAAT
TTAATTGGTATCTATAGAACATTTCATTCTAAAACAAAAGAATGCACCTT
CTTCTCAGCACCTCATGATACCTCAGCACCTTCTTCCAAATTTACCATAT
AATCGGTCACAAAACAGGCCTCAACAAGAAGGTTGAAATATTCCCATGCA
TCCTATCAGATCACTAGAGACTAAGACTGGTCTTCAATAGCAACAAAAAC
AACAGAAAGTCCACATACACATGGAAGACTGGTCTTCAATAGCAACAAAA
ACAACAGAAAGCCCACATAAACATGGAAGACTGGTCTTCAATAGCAACAA
AAACAACAGAAAGCCCACAGACACATGGAAGACTGGTCTTCAATAGCAAC
AAAAACAACAGAAAGTCCACACACACATGGAAGACTGGTCTTCAATAGCA
ACAAAAACAACAGAAAGCCCACATAAACATGGAAGACTGCTCTTCAATAG
CAACAAAAACAACAGAAAGCCCACAGACACCTGGAAGCTGAACAGTGTAC
TCAATGATAACTTGGTCAAGGAAGAAACAAAAAAGAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAGGGCAGCCAGGGCTACGCAGAGAAACCCTGTCTTGAAAAAC
CAAAAAACCAAAAAGGTTAAGGAGCTGGGATACAGGTATATGAAAGAGAA
TGAAGGATCTGGTGAAGAGGAAATAGCAGGAAGCGGCAGCAGTGTTTAGT
TGGGTAAGCTTAATTAGGAAAACTGGAACACTTTCTGCAAACTTCCCTTG
CAAGTCATCAGAAGATTAGAGCTTTTGATTCCCCTGACAATACAAGTAGC
CCGTGCTCATACTCCTCCAATGCTGGGGAGCAACTATGTTAATTACTTAA
CTAGGTCCACTATTTTCTGCCCTTTGAGGATCTAAAAGTTCAGGTATTTG
AGCAACTTGAAGGAAATGATGTTTCCACAAGACTCATGAAATTTAGCAAA
GCGACACTAAGCTTTCAGGTGAATGAACCATAAGCTTTGATTGGCAGCTG
TTTTTTGAAAATAAGTGATGTAATAAATCAGTTTATTTGAGAGAAAAATT
ATTTTAAGATAAGGAAATCATAGAAGGAAAATAGAGAAAATTGTTTTGGC
ACCCCAGAAATAGGGATACCACGGGGGGGGGGGGGGGGGCAAACTTTATT
CATTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_p02.g1 MSMg01no075_p02.g1 CHROMAT_FILE:
MSMg01no075_p02.g1 PHD_FILE: MSMg01no075_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:44 2005
         (501 letters)



>mm_chr2_35987412_35988313
          Length = 902

 Score =  948 bits (490), Expect = 0.0
 Identities = 499/502 (99%), Gaps = 1/502 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggcagccagggctacgcagagaaaccctgtcttgaaaaaccaaaaaaccaaaaaggt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggcagccagggctacacagagaaaccctgtcttgaaaaaccaaaaaaccaaaaaggt 260

                                                                       
Query: 61  taaggagctgggatacaggtatatgaaagagaatgaaggatctggtgaagaggaaatagc 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaggagctgggatacaggcatatgaaagagaatgaaggatctggtgaagaggaaatagc 320

                                                                       
Query: 121 aggaagcggcagcagtgtttagttgggtaagcttaattaggaaaactggaacactttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaagcggcagcagtgtttagttgggtaagcttaattaggaaaactggaacactttctg 380

                                                                       
Query: 181 caaacttcccttgcaagtcatcagaagattagagcttttgattcccctgacaatacaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaacttcccttgcaagtcatcagaagattagagcttttgattcccctgacaatacaagt 440

                                                                       
Query: 241 agcccgtgctcatactcctccaatgctggggagcaactatgttaattacttaactaggtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcccgtgctcatactcctccaatgctggggagcaactatgttaattacttaactaggtc 500

                                                                       
Query: 301 cactattttctgccctttgaggatctaaaagttcaggtatttgagcaacttgaaggaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactattttctgccctttgaggatctaaaagttcaggtatttgagcaacttgaaggaaat 560

                                                                       
Query: 361 gatgtttccacaagactcatgaaatttagcaaagcgacactaagctttcaggtgaatgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatgtttccacaagactcatgaaatttagcaaagcgacactaagctttcaggtgaatgaa 620

                                                                       
Query: 421 ccataagctttgattggcagctgtttttt-gaaaataagtgatgtaataaatcagtttat 479
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 ccataagctttgattggcagctgtttttttgaaaataagtgatgtaataaatcagtttat 680

                                 
Query: 480 ttgagagaaaaattattttaag 501
           ||||||||||||||||||||||
Sbjct: 681 ttgagagaaaaattattttaag 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 902
Length adjustment: 10
Effective length of query: 491
Effective length of database: 892
Effective search space:   437972
Effective search space used:   437972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)