Query= MSMg01no075_p04.b1 MSMg01no075_p04.b1 CHROMAT_FILE:
MSMg01no075_p04.b1 PHD_FILE: MSMg01no075_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:45 2005
(557 letters)
>mm_chr2_59666995_59667951
Length = 957
Score = 953 bits (493), Expect = 0.0
Identities = 537/563 (95%), Gaps = 19/563 (3%)
Strand = Plus / Plus
Query: 4 ggaattcctgtatagaacctgatctggtttgaggctgagcagagtggacctgcgctgaca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ggaattcctgtatagaacctgatctggtttgaggctgagcagagtggacctgcgctgaca 254
Query: 64 ggttcttaat---------cccccccacagcagatctgcactaacaagcacacagcaaat 114
|||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 255 ggttcttaatcgccccccccccccccacagcaggtctgcactaacaagcacacagcaaat 314
Query: 115 caaatctggctgtggagaaagaagaaggtgggaatctgaccccgtcgccaggcctggcag 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 caaatctggctgtggagaaagaagaaggtgggaatctgaccccgtcgccaggcctggcag 374
Query: 175 ggcgggcacgcttgtcagcttgtcagctgctccaacgtccggcttctctgccggctggtg 234
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 375 ggcgggcacgcttgtcagcttgtcagctgctccaacgtccggcttctctgctggctggtg 434
Query: 235 aaacacacgaatcctatttttagcgcagggctgtctgatgtgttactgtcaagacttcag 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaacacacgaatcctatttttagcgcagggctgtctgatgtgttactgtcaagacttcag 494
Query: 295 cagcagctgcagcagagattcccgattccgacttagaggcaccccgtttctcagcggtga 354
|||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||
Sbjct: 495 cagcagctgcagcagagattccagattccgacttaaaggcaccccgtttctcagtggtga 554
Query: 355 agccccttcactaaatgagaggggggagtgttgagtaggtggaccatccagtctcaactg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 555 agccccttcactaaatgagaggggggagtgttgagtaggtggaccatccagtctcaaatg 614
Query: 415 caagaccggactcgtctctttccggggactcctaggtctcggtgtgcagacacatgtgtg 474
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 caagaccggacttgtctctttccggggactcctaggtctcggtgtgcagacacatgtgtg 674
Query: 475 tgctcctgtgcacccctgatttctttctcctcctgcttgggtccagccatggaaagagga 534
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ----------cacccctgatttctttctcctcctgcttgggtccagccatggaaagagga 724
Query: 535 ggagagtccctgagtggaggaga 557
|||||||||||||||||||||||
Sbjct: 725 ggagagtccctgagtggaggaga 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no075_p04.g1 MSMg01no075_p04.g1 CHROMAT_FILE:
MSMg01no075_p04.g1 PHD_FILE: MSMg01no075_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:45 2005
(587 letters)
>mm_chr2_59753472_59754458
Length = 987
Score = 1120 bits (579), Expect = 0.0
Identities = 585/587 (99%)
Strand = Plus / Minus
Query: 1 attccaattcgaagctaagtcaagagaaggatgtgagcgcttttaaatgtttcccaagac 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 attccatttcgaagctaagtcaagagaaggatgtgagcgcttttaaatgtttcccaagac 728
Query: 61 ctggtgacaaatgacactctgtgtcatgcagatgatcacaatgaagctcctggcgcttct 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 727 ctggtgacaaatgacactctgtgtcatgcagatgatcacaacgaagctcctggcgcttct 668
Query: 121 tgccatgggatgctctcactagagcttcagagagaattaaacacgctccacactctgagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tgccatgggatgctctcactagagcttcagagagaattaaacacgctccacactctgagg 608
Query: 181 ggctgaacctaggtgcccagtgcacgccacagcagcgctggctgtcagcgcactgtagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ggctgaacctaggtgcccagtgcacgccacagcagcgctggctgtcagcgcactgtagct 548
Query: 241 gcggccccaactccatcctctagtgccatcactgggacatgtattaaccctttattttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gcggccccaactccatcctctagtgccatcactgggacatgtattaaccctttattttat 488
Query: 301 agcagccccgtggtaaggagagcttattggcttgaagtccactggacacacaaggggagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agcagccccgtggtaaggagagcttattggcttgaagtccactggacacacaaggggagg 428
Query: 361 actaaaggggagatcagtgtgtttaatggtgaactctaaaggaagtattccaaggtgagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 actaaaggggagatcagtgtgtttaatggtgaactctaaaggaagtattccaaggtgagt 368
Query: 421 gagaagaaacagctcttatagacatggaggccaagaaatagtagatagaacactatcctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gagaagaaacagctcttatagacatggaggccaagaaatagtagatagaacactatcctg 308
Query: 481 caagagatcagaaagcacaaaggcctgaaggaaagtcttaacacactgaggagcagaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 caagagatcagaaagcacaaaggcctgaaggaaagtcttaacacactgaggagcagaaag 248
Query: 541 tggggagaaaggccagtggtgtggggattataggggttttcactcag 587
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tggggagaaaggccagtggtgtggggattataggggttttcactcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
