BAC Information

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BAC

Clone NameMSMg01-075P07
Chromosome2 (Build37)
Map Location 116,761,843 - 116,762,168
singlet/doubletsinglet
Overlap genenone
Upstream geneMrg1, G630016G05Rik, 2810405F15Rik, LOC433464, Tmco5
Downstream geneLOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075P07.T7 (MSMg01no075_p07.b1)MSMg01-075P07.TJ (MSMg01no075_p07.g1)
ACCAG298648AG298649
length677673
length of high quality
(start - end)
245 (67 - 311)303 (83 - 385)
definitionCHROMAT_FILE: MSMg01no075_p07.b1 PHD_FILE: MSMg01no075_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:45 2005CHROMAT_FILE: MSMg01no075_p07.g1 PHD_FILE: MSMg01no075_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGA
ATTCTTTTGTGCCCAGTTACCTCACTCAGGATGATACCCTCCAGGTCCAT
CCATTTGCCTAAGAATTTCATAAACACATTGTTTTTAATAGCTGAGTAAT
ACTTCATTGTGTAAATATACCACGTTTTCTGTATCCATTCCTCTGTTGAC
AGACATCTAGGTTCTTTCCAGGTTCTGGCTATTATAAATAATGCTGCTAT
GAACATAGTGGAGCATATGTTCTTATTACCAGTTGGAACATCTTCTAGAT
ATATGCCCAGAATATTAATTGCTGGATCCTCTGGTAGTACTATGTCCAAT
TTTCTGAGGAACTGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCA
ATCCCACCAACAACGCCACCATTGTTCCTCTTTCTCCACATCTTCACCAG
TATCTGCTGTCACCTGAATTTTTTATCTTATCCATTCTGACTGTTGTGAG
GTGGAATTCTCACGGTTGTTTTTGAGTTGTATTTCCCTGATGACTACTAA
TATCGAACATTTTTTTCAGGTGCTTCTAATCCTTTCGGAAATCCTCAGTT
GAGAATTCTTTGTTTAAGCTCTGCCCCCCAAGAACAGCCAAAACTCTTCC
CAACAATAAAAGAACCTTTTGCCGTAN
CACATATAGTGGTAGCCTGGAGCCGCCTGTTTCAAAATAGAGGTGAACTA
TAGAATTATCGCAGAATTCCCACTTAAAAAATGTCAGCTATGTGACCTGT
GACCTTGGATAAGGAACAACATGATTACTCTGAGATAAATTTTTCTTCTT
TCTTTTTTCCTTCTCCCCCCCCCTCCTCCTCTTTGTCACTGTTGTCCTTC
TCCTTCTTCCCCTCTGCCCCACCTCCTCCTCTTCCTCCTTGTTCTTCCTT
AAGCCAGGAATGTGTAAGACTACATGACCCAAACGACTTCTGTAACTGAC
TGTCTTGTTTGCTGCTTTAGTTACGTTTGTAAGATACAAAGCTGTGTAGT
ATTTTTTCAGGCCTGAAAGTAAGGGTTGCGAAGGTGGGAATGTGTGCACA
GAGTTTACACACACTGTGTGTGTGATGCTGGTTAGTGCAGGAAGCTACTA
CAGACTCAAAGCTGATACAGCTACTGACCACGTGACTGCCAGCTGGACTC
CCTCTAAAGAAGTTACCTGGTTTTTGAACGGTTATACAGAATTGTAAAGT
TTTAAAATTCACGGCCAAAATCTTAAAATCAAAATCAGGTGCTCCCCTCT
CCCGATTCTATGTTTCTTCTATACATATCTAAAATAAGTATTATAAAAAC
ACTTCGTTACTTTTACTCTACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_p07.g1 MSMg01no075_p07.g1 CHROMAT_FILE:
MSMg01no075_p07.g1 PHD_FILE: MSMg01no075_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:45 2005
         (303 letters)



>mm_chr2_116761478_116762181
          Length = 704

 Score =  468 bits (242), Expect = e-136
 Identities = 295/326 (90%), Gaps = 23/326 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcagctatgtgacctgtgaccttggataaggaacaacatgattactctgagata-aatt 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 691 gtcagctatgtgacctgtgaccttggataaggaacaacatgattactctgagatataatt 632

                                                                       
Query: 60  tttcttctttcttttttccttctccccccc---------------------cctcctcct 98
           ||||||||||||||||||||||||||||||                     |||||||||
Sbjct: 631 tttcttctttcttttttccttctccccccctccccccctctctctcctcctcctcctcct 572

                                                                       
Query: 99  ctttgtcactgttgtccttctccttcttcccctctgccccacctcctcctcttcctcctt 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 571 ctttgtcactgttgtccttctccttcttcccctctgccccacctcctcctctttctcctt 512

                                                                       
Query: 159 gttcttccttaagccaggaatgtgtaagactacatgacccaaacgacttctgtaactgac 218
           |||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||
Sbjct: 511 gttcttccttaagccaggaatgtggaagactacatgatccaaacgacttctgtaaccgac 452

                                                                       
Query: 219 t-gtcttgtttgctgctttagttacgtttgtaagatacaaagctgtgtagtattttttca 277
           | |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 451 ttgtcttggttgctgctttagttacgtttgtaagatacaaagctgtgcagtattttttca 392

                                     
Query: 278 ggcctgaaagtaagggttgcgaaggt 303
           ||  ||||||||||||||||||||||
Sbjct: 391 ggggtgaaagtaagggttgcgaaggt 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 704
Length adjustment: 9
Effective length of query: 294
Effective length of database: 695
Effective search space:   204330
Effective search space used:   204330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)