BAC Information

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BAC

Clone NameMSMg01-076B15
Chromosome2 (Build37)
Map Location 89,690,483 - 89,690,619
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48
Downstream geneOlfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076B15.T7 (MSMg01no076_b15.b1)MSMg01-076B15.TJ (MSMg01no076_b15.g1)
ACCAG298758AG298759
length704719
length of high quality
(start - end)
490 (44 - 533)137 (55 - 191)
definitionCHROMAT_FILE: MSMg01no076_b15.b1 PHD_FILE: MSMg01no076_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:57 2005CHROMAT_FILE: MSMg01no076_b15.g1 PHD_FILE: MSMg01no076_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGCCCTTACCTAAACATGATAAAAGAATATACAGCAAAGCAGTAG
CCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCA
GGGACTAGGATAAAAACCTAGGATACCCAAGATATAAGATATAAGATTTG
CTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATG
CCCCTCCTTAGAATTGGGAACAAAACACCCATGTAAGGAATTACAAAGAC
AAAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATC
CAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATACA
CTAGCATGATTTTATCGAAAGGTCCCAGATGTCTCTTGTGAGACTATGCC
GGGGCCTAGCAAACACAGAAATGGATGCTCACAGTCAGTTAATGGATGGA
TCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCATGGAGCTAAAG
GGATCTGCTACCCTATAGGTGGAACAACATTATGAACTATCCAGTACCAC
GGAGCTCTTTGACTCTAGTTGCATATGTATCAAAAGATGTTCTAGTCGGC
CATCACTGGAAAGAGAGGTCCATTTGCATACGCCACTTTATATACTCCAG
TCCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCCACTGGGTACATAAAATATAAAGTAGATGATATTTTTGGAGATTA
TTTTTATTTCATTTTGCTTTGGGGGACATTTTACTTAACTTTGTTTGCCT
TATTTTTTATATTATACTTATCAATTTTGCATCTTTATGGATTTTGTGCG
CGTGCTTGAATGTCTGTGTACTTGTTTATCGCTCTCGTTCTTCCTCCTTC
TATTACCCTGCTCCTCCTTCTTTTTTCCCTTTTTCTCTCCCTCTTACCCC
GCTTCTCTTTCTCTCATATTTCTTCCGTCTTCTTCTTCGCTCTCCCCTCC
CTCCCCTTTTTTCTTCCTCTCCTCCTTCTTACTTGTTCCTTTCGTCCCCC
TCCTTCTCCCTCCTTCTTCTTCCTTCCTTTTTTCCTCCGCCCCTTTCCTC
CCCCTTCTCCATTTTCTACCTTTTTCTCCCCCTTTTCCCCCCTTTTCTCA
TCCTCTTCATTTATCATCCCTCTTCCTTCTCTCCTTCTTCTTTCCCCTTT
TCCCTCCCCTCTCTCCCCCTTCCCCCTCTATCCTCTCCTCCTTCCTTTTC
CCTCTTTCCCCCTTCTTCTCTTTTTTCCCTTTCCTACCCTCTTCATCATC
ATTACTTCACCTCACTTCCCATACCTCCCCCCCCCCACCCTCCTACTCTT
CTCTTTCTCTCTCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_b15.g1 MSMg01no076_b15.g1 CHROMAT_FILE:
MSMg01no076_b15.g1 PHD_FILE: MSMg01no076_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:57 2005
         (137 letters)



>mm_chr2_89690283_89690819
          Length = 537

 Score =  257 bits (133), Expect = 2e-73
 Identities = 136/137 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccactgggtacataaaatataaagtagatgatatttttggagattatttttatttcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ccactgggtacataaaatataaagtagatgatatttttggagattatttttatttcattt 278

                                                                       
Query: 61  tgctttgggggacattttacttaactttgtttgccttattttttatattatacttatcaa 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 277 tgctttgggggacattttacttaactttgtttgtcttattttttatattatacttatcaa 218

                            
Query: 121 ttttgcatctttatgga 137
           |||||||||||||||||
Sbjct: 217 ttttgcatctttatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 537
Length adjustment: 8
Effective length of query: 129
Effective length of database: 529
Effective search space:    68241
Effective search space used:    68241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)