BAC Information

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BAC

Clone NameMSMg01-076I23
Chromosome2 (Build37)
Map Location 111,407,875 - 111,408,146
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295
Downstream geneLOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076I23.T7 (MSMg01no076_i23.b1)MSMg01-076I23.TJ (MSMg01no076_i23.g1)
ACCAG299108AG299109
length793985
length of high quality
(start - end)
273 (122 - 394)---
definitionCHROMAT_FILE: MSMg01no076_i23.b1 PHD_FILE: MSMg01no076_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:35 2005CHROMAT_FILE: MSMg01no076_i23.g1 PHD_FILE: MSMg01no076_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTAAAAAAAATAAATAAAATCAAAAAAAAAAAAATAAAAAACTCCAATTT
TTAAATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAAAGGACC
GCGGAATTATGGATAACACCATACTGGAGACTAGAAAGGTCTGATTCGCA
TGTGTATATTTTCTTCTGTATCTTTACTATATGTTAATACATTAACTATG
TAACATCTTTTTAAGCTATTGTAGTACATGGCTCCATTTTTTTGCTAACA
TTTAAGTTATCACCTGAAGGCAAAACATTGTGAGTATCATCATTAAAACA
ACTGATAAACGATGGTCACCAGAATGTGTCACAAAGCATACATAGCATAT
TTTACATCCATAGATGTATAATCCAATAGTGTGCTATGTTCATAGTACTA
GAGGAGAGAATATACAAGGGATTGCTTGAGACTTTGTTCTACTTTTCAAT
GAAAAGGATAGTCTGATACATCTTTGGTAATAAGTGTACTTGCTTTCTTA
AATAGAAATTCTTTTCATTTGAGGCACAGTTCTATCATCACTTTCCAAAC
TTGTGAAGAACTTACATATCACCATATAAATTGATTATGTATCAAATGAA
TACTGCAATAAGCCTCATCGCTACATAAAGAATAAAAGGTATAAAAGCAT
CTTGCTAGAAGTTTGAATTAAATTATCTAACTCCGAACAATCATCTAAAT
ATATTACTCATAATTAACCGCATCTGTCTTTACCACTCGTACACACGATT
CGACTTTAACGCACCCTGATCCGTCCACCCCTTCCAACCACAC
AAAAAAAAAAAAAAAAAAAAAACAAAGGAAAACAAGCAACACAACCATCC
TCCCTCTNCGCAATGCAGGGNGNAGGCNGGGNNGGNGNCGGGTTCCTGAC
TNGCANGNGAGNNNNNNGNNGGTTTCANGGACCAGACGGGGNGANNNANC
NGNNNNCNNNANGGGNNNGGGGNNAAGCCNNAACGGCCCCCGCGGGNNAG
AGGACAGGAGAAAACAAAGAAGAAAAANNCAGCNNCAGGAGGCGGCAGNG
AAAAGAGGGCANANAAGCGCGCAGGAGGGAGAGAAGGCAAAGAAACACAG
AAAGACAAAAAAAGACAACNAACAAAGGAAGAGAAAAGAGAGTTTTTAAG
AACGAAAGAGGAGGGAAGAGGGAGNGGGAGAACAGGCAGAGGACGCGGAG
GAGCAGAGAGAAGAAACAAGATTTTTTATCGTTTTTANAGAAGAGAGAAG
AAGACGAAGCAGGAGCACAAGAAGAGTAAGACCCACCGCCCGGCCGCCCG
GAAGAGAGGAGGAGAAACACAGAGAGAGAAGAGAGAGGAGAGAAGAAAAG
AGAGAAAGAGGGAAAAAACAGAAAGAGGAGAGACAAAAGAGGAGGGAAGG
AAAAGAAGCAGGANACAAAGAGAAAGGAGAGAGAGCAGAGAAACAGAAAG
GGANGGAGAGAAGGAGAGGAAAGGCGGAAAAGACAAAAAAAAAGAGCAAA
CGCAGCCGAGCAANGAGAAAAGAAAGAAGGCGAGAGAGAAAACAAGGCAA
AACGGGGGGAAGGCGAGAGCGAGAGAAGAGAGAGGAGAGGNAGGAAGGAA
GAACGAAAGACAGAGAGGAGCAAAGACACAACAGAGAGGCAGACACAGAA
ACAGGAGAGAGACACGGAAACAGAAAGAAGCAACGACGGAGGAAGCTTGT
TCTTGTTTTTTATATTCGAAGATGATTGAAAGAGAATCAATATAAATGCG
AAGAAGAATAGAAGTAATNAGAGAAGGATAATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_i23.b1 MSMg01no076_i23.b1 CHROMAT_FILE:
MSMg01no076_i23.b1 PHD_FILE: MSMg01no076_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:35 2005
         (273 letters)



>mm_chr2_111407675_111408346
          Length = 672

 Score =  505 bits (261), Expect = e-147
 Identities = 270/273 (98%), Gaps = 1/273 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactggagactagaaaggtctgattcgcatgtgtatattttcttctgtatctttactata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tactggagactagaaaggtctgattcgcatgtgtatattttcttctgtatctttactata 413

                                                                       
Query: 61  tgttaatacattaactatgtaacatctttttaagctattgtagtacatggctccattttt 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 412 tattaatacattaactatgtaacatctttttaagctattgtagtacatggctcca-tttt 354

                                                                       
Query: 121 ttgctaacatttaagttatcacctgaaggcaaaacattgtgagtatcatcattaaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttgctaacatttaagttatcacctgaaggcaaaacattgtgagtatcatcattaaaacaa 294

                                                                       
Query: 181 ctgataaacgatggtcaccagaatgtgtcacaaagcatacatagcatattttacatccat 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 293 ctgataaacgatggtcaccagaatgtgtcacaaagcagacatagcatattttacatccat 234

                                            
Query: 241 agatgtataatccaatagtgtgctatgttcata 273
           |||||||||||||||||||||||||||||||||
Sbjct: 233 agatgtataatccaatagtgtgctatgttcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 672
Length adjustment: 9
Effective length of query: 264
Effective length of database: 663
Effective search space:   175032
Effective search space used:   175032
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)