BAC Information

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BAC

Clone NameMSMg01-076J03
Chromosome2 (Build37)
Map Location 145,589,007 - 145,589,422
singlet/doubletsinglet
Overlap genenone
Upstream geneDtd1, 1700010M22Rik, Slc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810
Downstream geneRin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik, LOC668918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076J03.T7 (MSMg01no076_j03.b1)MSMg01-076J03.TJ (MSMg01no076_j03.g1)
ACCAG299116AG299117
length695680
length of high quality
(start - end)
611 (68 - 678)416 (55 - 470)
definitionCHROMAT_FILE: MSMg01no076_j03.b1 PHD_FILE: MSMg01no076_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:35 2005CHROMAT_FILE: MSMg01no076_j03.g1 PHD_FILE: MSMg01no076_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAA
TTCGCAAAATACAGAAATAGCCACTGGTAGGGACCATCTGCATTTTCACA
TGACCTGGACATTAGAGACAGTGTGGTGGCATTTTAATGGATGGCACGAG
TCACAGCTGTTGTAAGAGAGCCCCTGGGAGCTATAGTAACATCACCCATT
CCCCATTCATTTGGTTCTTGGATTCCAGCTTTGTGTTAGAAAACATCAGT
GATGTTTGGGAAAAGGAAAGATGGTTAGAGAGTCTACTGTAGAAAGGCTG
ATGTGGAAAGCTGTTGGGTCTCACTTTTCACTAGGTTATGTGGCCCAGGG
ATGATGCAATCCTGAGGTAATATTCAGACGAGTTGCTTCAGAAAGGCCAG
GAAATGCCACTGTGGGAGTGGGACAGTGAGACAGGATGAGGAGGTGAACC
AGCAGCAGCTGTATTAACAATCCAGCTATCATACAGACACCTAGAGCTAC
ATCCCTACAGAGGGACATTGTGTGAGGCTTTCTTGGGGAGATGCTATTCA
CTCTAGATAGAGCAGCCATGACAAGCCAAAGTAACACCACAGTCCGGCTC
GATGAAGCACTGAGTCTCTGGGGTTGCTTACAGGAGCGTGGGTGAAGGGC
TACTTACAGAGGCGTGGATGACTCAAGGTCAGCTGCATCCCTGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCATTCCTTCTGTTTCCATCTCCCAAGTGATAGAATTACAGGTATG
TCTACCATGTATGGCTTGATTTTTCTCTTGTGTTTAAAATACTGCGCTCA
AACAAACAAACAACCTCCCACTGCAGGAAACTGTGGCGGATACCACTAGG
AAGAAGCAATCAGTCAGCAGAACCCATCACACAACAAAGACAGCCTCCTG
ATACTACCGTGTCTGACATTTTATATGGCTGTTTGGGTGCAGGACATGAA
CTCAAGGCCTCATGTTTATGACACAAGCATTTTACCAACTGAGCCATCTC
CCCAGCCCCTAATAAATGCTTTTAAAAGGTATAAGATTTGTTAGAGAACA
CATTAGTGGGTGTGTGTTTTGATAATTAATATGCAGTATTTAGAATGTGC
TAGAAGTGGCCAGGCATGTAGTTCAGTGACAAAGCATGTGTAAGACCTTA
TACAAAGCATGGGCTGTGTTTAGCATGTATAAGACCTTAGACAAAGCATG
TGTTTGATGCATTTAACATTCTAACTCTTCAGCATCCCCTAAGAAATAAA
GAAAAGAAAAAGATAGATGCCGTGATTTAAAGATCCATCCATCCATCTAC
CACACCCCTGTGGATACCTCCTTTTCAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_j03.g1 MSMg01no076_j03.g1 CHROMAT_FILE:
MSMg01no076_j03.g1 PHD_FILE: MSMg01no076_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:36 2005
         (416 letters)



>mm_chr2_145588961_145589776
          Length = 816

 Score =  727 bits (376), Expect = 0.0
 Identities = 406/416 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattccttctgtttccatctcccaagtgatagaattacaggtatgtctaccatgtatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcattccttctgtttccatctcccaagtgatagaattacaggtatgtctaccatgtatgg 403

                                                                       
Query: 61  cttgatttttctcttgtgtttaaaatactgcgctcaaacaaacaaacaacctcccactgc 120
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||
Sbjct: 402 cttgatttttctcttgtgtttaaaatactttgctcaaacaaacaaacaacctccccctgc 343

                                                                       
Query: 121 aggaaactgtggcggataccactaggaagaagcaatcagtcagcagaacccatcacacaa 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 342 aggaaactgtggcggataccactaggaagaagcgatcagtcagcagaacccatcacacaa 283

                                                                       
Query: 181 caaagacagcctcctgatactaccgtgtctgacattttatatggctgtttgggtgcagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 282 caaagacagcctcctgatactaccgtgtctgacattttatatggctgtttgggcgcagga 223

                                                                       
Query: 241 catgaactcaaggcctcatgtttatgacacaagcattttaccaactgagccatctcccca 300
           |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 222 catgaactcaaggcctcatgtttatgtcacaagcgttttaccaactgagccatctcccca 163

                                                                       
Query: 301 gcccctaataaatgcttttaaaaggtataagatttgttagagaacacattagtgggtgtg 360
           |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 162 gccccttataaatgcttttaaagggtataagatttgttagagaacacattagtgggtgtg 103

                                                                   
Query: 361 tgttttgataattaatatgcagtatttagaatgtgctagaagtggccaggcatgta 416
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 102 tgttttgataattaatatgcagtatttaggatgtgctagaagtggccaggcatgta 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)