BAC Information

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BAC

Clone NameMSMg01-076L04
Chromosome2 (Build37)
Map Location 93,791,913 - 93,792,150
singlet/doubletsinglet
Overlap genenone
Upstream geneSyt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967, Gm1335
Downstream geneLOC620695, Alkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076L04.T7 (MSMg01no076_l04.b1)MSMg01-076L04.TJ (MSMg01no076_l04.g1)
ACCAG299212AG299213
length701703
length of high quality
(start - end)
376 (47 - 422)238 (77 - 314)
definitionCHROMAT_FILE: MSMg01no076_l04.b1 PHD_FILE: MSMg01no076_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:46 2005CHROMAT_FILE: MSMg01no076_l04.g1 PHD_FILE: MSMg01no076_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTTCCTCTGCTAGAGCTTCTGGTGCTCTTCACCGCTGACCCAT
CTTGGCAGCCTGATACTGTCCTTTAAAGGCATGAAGAAACTGGGACAGGA
GTGAGTTGACACGTTGTCTTGGAAGGAGTTGCAGATGCAACATCAACAGA
GGAAATCAGAAAATAACCACTAACTACAGAATTCTATAACCAGTAAAGTT
ATGTTCCAAAAAGGGAGCAAAACTGGCATCCTCAGACAAGCAGGGATTGA
AAGTCTGTCTCTAGCAAACTCTCCAATCCCACCCCAGGAGCTGCACAACA
GACAGAAGACACGTGGCTTCCAGTGGATGGCCGGAATAACTCTGTGATCA
CCTGAAGCAAACGTCACCTGCGTAAAACAAGACTTTGTATGGTCAAAACT
GACAAGCACAAATGAACACAGACCACAAACCCAGCCAGGGGCCACCAGGG
ATTTGGGGTCTCCCATTGCTATAGGGAAAGCTGAGGCATGCTTGCTTTCC
TATTATCAAACTGTTTGTAGGTGTTATATTCTAGGATACCCGCCAGCACG
AAAATACCGCATATGTCACTACGAGCACAACACGAAGAGGCCGAAACCAA
AAAAACCCCCCACTCCGAACATATACGCTATCCTCTGACTACCCCCTACT
C
NAACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGGCATTGGACTCATCAAGTAGG
AATATTGCCATGGGTTTCTTAACCCAGTCCGTCACTGTAACTGGGGGTGG
GGGTGGCTTGTGGCTTCTCTTGCAGTTGATCTGTAACGACTATGGAGGAT
TGCTTGTGACTCCTCTGTTCCTGCTTCCAGATTTGCCTCATTCTTGAGAT
CTTCCAGCCTCTGCCACTTGAGCATCTCCTCCTCCCCGTGTAGCACCATG
ATCGGCACTGAAGCAGAAGCCGTGGAGGAACTCTGTCTGCTGGCTTGCTC
TTCATGGTTGGCTCAGCTTGATTTCTTACACACCCCTGGACAACCATTCT
ACGAGTGTCACTGTTCCCACCGCACTGTCCTCTCCCATACCTCTTATTTA
TCACTAGACAGTCTCTCCGACTTGTCTCCCTATAATCTGACGCATATACC
TCTCCCCTGACTCTCTTCCTTGACGTACCCGCCCTGTGCCCAATCCTCCC
ATTTCCTCTGCTTCCCCCCCTTCCTCCCCCATCCTCTCCTTTCTACTTCC
CTTCCCTGTCCCATTTTCTCTCTCTCTTCCCCCCCCTCCCCCTTTTTCTC
CCTTTTCCTCTCTTTTTGTCTCCTCCATCTCTTTCCCACCTCTCCTCCTC
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_l04.g1 MSMg01no076_l04.g1 CHROMAT_FILE:
MSMg01no076_l04.g1 PHD_FILE: MSMg01no076_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:46 2005
         (238 letters)



>mm_chr2_93791713_93792350
          Length = 638

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggcattggactcatcaagtaggaatattgccatgggtttcttaacccagtccgtcact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 438 taggcattggactcatcaagtaggaatattgccatgggtttcttaacccagttcgtcact 379

                                                                       
Query: 61  gtaactgggggtgggggtggcttgtggcttctcttgcagttgatctgtaacgactatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtaactgggggtgggggtggcttgtggcttctcttgcagttgatctgtaacgactatgga 319

                                                                       
Query: 121 ggattgcttgtgactcctctgttcctgcttccagatttgcctcattcttgagatcttcca 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 caattgcttgtgactcctctgttcctgcttccagatttgcctcattcttgagatcttcca 259

                                                                     
Query: 181 gcctctgccacttgagcatctcctcctccccgtgtagcaccatgatcggcactgaagc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gcctctgccacttgagcatctcctcctccccgtgtagcaccatgatcggcactgaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)