Query= MSMg01no078_c19.b1 MSMg01no078_c19.b1 CHROMAT_FILE:
MSMg01no078_c19.b1 PHD_FILE: MSMg01no078_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:25 2005
(548 letters)
>mm_chr2_47841280_47842227
Length = 948
Score = 1021 bits (528), Expect = 0.0
Identities = 540/544 (99%)
Strand = Plus / Plus
Query: 5 gaattctatttttgtaccttggattgagttctacatttcattcagctcttcattttgttc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatttttgtatcttggattgagttctacatttcattcagctcttcattttgttc 264
Query: 65 cgctggcatacattcatatcctatttcagttgtttgaacatagttacaatcactcttttg 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctggcatacattcatatcctatttcagttgtttgaacatagttacaatcactcttttg 324
Query: 125 aattccttttcctgaagatcttcaaggtccttctcatttgggtttgtacctctttgagat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aattccttttcctgaagatcttcaaggtccttctcatttgggtttgtacctctttgagat 384
Query: 185 tagcaatgtggaaggtgtaggtcacattcatgtttcctgttatttttgtttctgcactag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagcaatgtggaaggtgtaggtcacattcatgtttcctgttatttttgtttctgcactag 444
Query: 245 aaattttctcatctggaattgtgtgtaacttgagtgtttttcccattttgctcaagttgc 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 aaattttctcatctggaattgtgtgtaagttgagtgtttttcccattttgctcaagttgc 504
Query: 305 ttttttgtattttcagtgcaggtctgtacaatattcagggaataattcagtgtaacaaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttttgtattttcagtgcaggtctgtacaatattcagggaataattcagtgtaacaaag 564
Query: 365 ttgcaaagttgttctcttttatggaactggtgtaaaaggctgctactctctgcctaatta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgcaaagttgttctcttttatggaactggtgtaaaaggctgctactctctgcctaatta 624
Query: 425 gacacagcccaagtgtcagcgcagtccatgctggccctttcctctgctaccttctgctat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 625 gacacagcccaagtgtcagcgcagtccatgctggccctttcctctgctaccttttgctat 684
Query: 485 gactccccaagtctgcatgtgctattttgaataagctctgctcagtgagtcaaccttcag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gactccccaagtctgcatgtgctattttgaataagctctgctcagtgagtcaaccttcag 744
Query: 545 atgt 548
||||
Sbjct: 745 atgt 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_c19.g1 MSMg01no078_c19.g1 CHROMAT_FILE:
MSMg01no078_c19.g1 PHD_FILE: MSMg01no078_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:25 2005
(539 letters)
>mm_chr2_47959392_47960330
Length = 939
Score = 961 bits (497), Expect = 0.0
Identities = 531/547 (97%), Gaps = 8/547 (1%)
Strand = Plus / Minus
Query: 1 aactgtctaaggagaccattcaggccatgtaaatgtttgtggcagtacaattgtgacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 aactgtctaaggagaccattcaggccatgtaaatgtttgtggcagtacaattgtgacaga 869
Query: 61 gataactggaggtcacatgctgttttggaagcaagtatagaacataagaaacttaaagtg 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 868 gataactggaggtcacatgctgttttggaagcgagtatagaacataagaaacttaaagtg 809
Query: 121 aaaaatttcaatttttagacataattgctatatatttcta--------aaacaaacaaac 172
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 808 aaaattttcaatttttagacataattgctatatatttctaaaacaaacaaacaaacaaac 749
Query: 173 aaacaaacacctccccctccaaacaaaaagaaaaagaaaaaaacaaggccaagtcatgcc 232
||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||
Sbjct: 748 aaacaaacacctccccctccaaacaaaaacaaaaagaaaaaaacaaagccaagtcctgcc 689
Query: 233 agctgcatttaagacatggtcttctggtgcagagcctttaatttcataggttctgtcttg 292
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 688 agctgcatttaagacatggtcttctggtgcagagcctttcatttcataggttctgtcttg 629
Query: 293 tagatgagatgtgatgatgatcacatgaataattttaactaaagaaaacccatccctctt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tagatgagatgtgatgatgatcacatgaataattttaactaaagaaaacccatccctctt 569
Query: 353 aaagcaacgtcttctttcttaactcccactctttttattctatcttgcttcattcttccc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aaagcaacgtcttctttcttaactcccactctttttattctatcttgcttcattcttccc 509
Query: 413 ttaatgaaataacacaaaacttttttctaatgttagtcagtatatatagcttgccaagtg 472
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttaataaaataacacaaaacttttttctaatgttagtcagtatatatagcttgccaagtg 449
Query: 473 aatattaaatacatgcatgtatatgtatgatgacatatacttgaaatttcataaaatatt 532
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aatattaaatacatgcatgtgtatgtatgatgacatatacttgaaatttcataaaatatt 389
Query: 533 tattata 539
|||||||
Sbjct: 388 tattata 382
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
