BAC Information

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BAC

Clone NameMSMg01-078F07
Chromosome2 (Build37)
Map Location 25,776,645 - 25,776,912
singlet/doubletsinglet
Overlap genenone
Upstream geneArrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1
Downstream geneCamsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078F07.T7 (MSMg01no078_f07.b1)MSMg01-078F07.TJ (MSMg01no078_f07.g1)
ACCAG299692AG299693
length691720
length of high quality
(start - end)		366 (47 - 412)268 (75 - 342)
definitionCHROMAT_FILE: MSMg01no078_f07.b1 PHD_FILE: MSMg01no078_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:37 2005CHROMAT_FILE: MSMg01no078_f07.g1 PHD_FILE: MSMg01no078_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGAATACCACAGGATTTTGTTTATTGCCTTGTACCTTGACCT
AGAACTGACTTTATTCTTTGCATGTACTTAGAATGGTATAAAAGCAGACT
AGAGAAAAATAAATCCGCCTCAGCTTCAGAACTGGCTGGAGCCATGTTAT
AATGTTGTCTAATCGTCTTTTTTTCTTTTCAAACTTCCCTCTGCCCCTTG
AGACCCTGTTGACAGACTGAGCTGTCTTGGTCAGATGGCACATCAATATT
GGAGCTCAAGTATGAAGGGTACCATGAAGGACACCATGGGGAAGGAGTGT
GCATAAAAGAAAATAAAGAAGATTTGGGCCAACGGTGAATAAACCCTGTA
AAAAGGGACAAGATAACGCCAGACTGCTTTCTGTGTGTGTTTTTAGAATA
ATGCTAAAATCTAGAAGAGCGAAGATCATTCTCATAGATGCTTTTGGTCT
TTGGACCCTGATTAGAGGTAGTTTAGACCCTATACTAGAGAGAGAGAGAA
TGTGTTTCACATTATCATCTCTCTCCCCCCCCCATTTGATTATGATTTTC
TGCTTTTACAATGTTATTGCTTGTTATGTTTTTCCCGAGTTTTCCTTACC
ATTAGCTCTTAAACCTACATAACTCCCCTCCTGACTCTTCA

NCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCTCTAGGCTCAAGCAGCCTAGGAG
GCTGCAGTCCTCGGCTGATATCTGGACACAAGGGAAGTAGGATTCACTGG
ACCTAAGTGCTGAGGGGCAGAGGCAGAGCCTGGCAGCCCTGACGCACCTC
TGGCTGTCTCACCATGCTCTGCCACCAGCATATGCTATGGTGAGAAATTT
TGTGGGGTTTTATGTATATGACTGTGTGCTGCCTCAGATCTCCTGGAACT
TGGTTATAGATGCTTGTGAGCTGCTGGTTGTGTGTGTGTGTGCGCGTGCG
TGTGCTGTGTGTGCGCTCCCATCAACTCCTTTTTTCCCCCTTCTCTTCTC
CTTCTTTCTTTTTCCCCCCCCTCTTCTTTTCACCCTATTCCTTCTCTCTC
CTCTCATTCGTTCTTCTCTCCGATTTCCTCTATTACACTCAATCATTTCT
TATATCTCATTCTATCTCCTCTTCTCTCGTTTTTTTCCATCCTTCTTCTA
TCTTATATTTTCTTTTTCTACCCCCCCCCTCCTCTTATTGTCCGCCTATT
CGTCTTACTCCATCCTACTTCTACACCTACCACTTTTCTCTATACCACCG
AAACTTCCTCCGTTTCTTTCTCTCTTTATCTCCCGCCGCTTCCTTCTCTC
TTCGCTTCCCCTTATATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_f07.g1 MSMg01no078_f07.g1 CHROMAT_FILE:
MSMg01no078_f07.g1 PHD_FILE: MSMg01no078_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:38 2005
         (268 letters)



>mm_chr2_25776507_25777174
          Length = 668

 Score =  511 bits (264), Expect = e-149
 Identities = 267/268 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctctaggctcaagcagcctaggaggctgcagtcctcggctgatatctggacacaaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttctctaggctcaagcagcctaggaggctgcagtcctcggctgatatctggacacaaggg 347

                                                                       
Query: 61  aagtaggattcactggacctaagtgctgaggggcagaggcagagcctggcagccctgacg 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aagtaggactcactggacctaagtgctgaggggcagaggcagagcctggcagccctgacg 287

                                                                       
Query: 121 cacctctggctgtctcaccatgctctgccaccagcatatgctatggtgagaaattttgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cacctctggctgtctcaccatgctctgccaccagcatatgctatggtgagaaattttgtg 227

                                                                       
Query: 181 gggttttatgtatatgactgtgtgctgcctcagatctcctggaacttggttatagatgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gggttttatgtatatgactgtgtgctgcctcagatctcctggaacttggttatagatgct 167

                                       
Query: 241 tgtgagctgctggttgtgtgtgtgtgtg 268
           ||||||||||||||||||||||||||||
Sbjct: 166 tgtgagctgctggttgtgtgtgtgtgtg 139


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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