BAC Information

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BAC

Clone NameMSMg01-078F20
Chromosome2 (Build37)
Map Location 32,639,782 - 32,640,330
singlet/doubletsinglet
Overlap gene1700019L03Rik
Upstream geneAbl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1
Downstream geneStxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078F20.T7 (MSMg01no078_f20.b1)MSMg01-078F20.TJ (MSMg01no078_f20.g1)
ACCAG299718AG299719
length693695
length of high quality
(start - end)
552 (41 - 592)556 (71 - 626)
definitionCHROMAT_FILE: MSMg01no078_f20.b1 PHD_FILE: MSMg01no078_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:40 2005CHROMAT_FILE: MSMg01no078_f20.g1 PHD_FILE: MSMg01no078_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTCAGCTCCTCCACCATGGCCAACTCTGGAGTCTTGGTCCCACTGGCAT
CCTTCTTGCCCCCTATCTTCTTGCCCTGCATCTCCTTGCCTCCTTTGTTT
GGCTTCTTTTTTGGAGCCATGGCTGATGGCAACCACTTTTTAAAGTCCCC
TTTAAGAAGCCAGGTAGTTGCTAAGGAAGTTGTTTCCATACATAGCAACA
GTGAGGCTGGGCTTTAAAGGGCTACTGTCCTCTTCCTGACATGGATCCTG
TGTCCGGCCTAGGCCTAGCTTTTTCAGAGCAGGATACCAGGCTCTTGAGT
ACAAGTTTGGGTTCCAGGAAGACCTTTCCTTCCCTCAGATGGAAATAAAT
TAGAATCAAAGGACCTTAGCCTTTGGGACTTTGGGATAATCAGAAACAAT
TGCTGAGCCCCCAGTCTAGTGTGTGCCTCTGCCTAGACCAACCTGCCAAT
TCTTTAGTGGCACAGCCACACATTTTGTATTGGAGGCTCCCATGCTGGGG
TCTCGGGAGATCTTTACTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTC
CTATCTTTTCATCTCTCTGTCTTCCTACACCTCATCTTCTCCCACTTTTC
TTTCTACCTGTCTCTTCCTCTTCACTTCTTCCTTCTTCCTTTC
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGGTTCCATTGCAGGAACACAGGGAAAA
AATATGGATCCATGGGTAAATCCAAATCTTGAACCTTCAACAGCAAAGTG
GCAGCCACCATTCAGGGAAAATAGCGTGCTCTTACCAGAAAGTTCTCTAG
CCAGAGACCGGTGTCTCATCTGCCGGGCAATGTTGACAATCTCATCAAAA
GTAATGTTCCCACTGTGTTTAACTGCAGAAAGAAAGCACAGGGCCTTTTA
CAGCTTCCCCTGTCTTCTGAGATCATGGCTCCATTTTACCTATCGCTGGG
CTGTTCCCACGCTTTCGGCACAGAGCCATCCACATGTAGGACAGCCCTGT
TTCCTAAAAGCTGGGGCTCACTGTCAGCTCACCACTGGATTGCACCAGCC
AACAATACTGGTCAGGTGCAGTGGCGGGTGGCTGGGGCACAAGCAAGTCC
TCACCAGCACCCCTAACACGATTTTAGGGATGGAAACAGATAAACCCCTG
AGGCACTGTTCATTTCTGCACCCAGGAAAGGGAACAGACAACAGACGCCT
ACTGTGATCTCATTCCACCCCTAGGTCCCAAGAAAGGGATGGACACAGCT
GAGTAGCAGACTGCAGCGGAAACCCATGGAGTGTGGCCGACTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_f20.b1 MSMg01no078_f20.b1 CHROMAT_FILE:
MSMg01no078_f20.b1 PHD_FILE: MSMg01no078_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:40 2005
         (552 letters)



>mm_chr2_32639578_32640530
          Length = 953

 Score = 1013 bits (524), Expect = 0.0
 Identities = 543/550 (98%), Gaps = 3/550 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttcagctcctccaccatggccaactctggagtcttggtcccactggcatcctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttcagctcctccaccatggccaactctggagtcttggtcccactggcatcctt 264

                                                                       
Query: 65  cttgccccctatcttcttgccctgcatctccttgcctcctttgtttggcttcttttttgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttgccccctatcttcttgccctgcatctccttgcctcctttgtttggcttcttttttgg 324

                                                                       
Query: 125 agccatggctgatggcaaccactttttaaagtcccctttaagaagccaggtagttgctaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agccatggctgatggcaaccactttttaaagtcccctttaagaagccaggtagttgctaa 384

                                                                       
Query: 185 ggaagttgtttccatacatagcaacagtgaggctgggctttaaagggctactgtcctctt 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 ggaagttgtttccatacatagcaacagtgaggctgggttttaaagggctactgtcctctt 444

                                                                       
Query: 245 cctgacatggatcctgtgtccggcctaggcctagctttttcagagcaggataccaggctc 304
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctgaca-ggatcctgtgtccggcctaggcctagctttttcagagcaggataccaggctc 503

                                                                       
Query: 305 ttgagtacaagtttgggttccaggaagacctttccttccctcagatggaaataaattaga 364
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 504 ttgagtacaagtttgggttccaggaagacctttccttccctcaaatggaaataaattaga 563

                                                                       
Query: 365 atca--aaggaccttagcctttgggactttgggataatcagaaacaattgctgagccccc 422
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atcataaaggaccttagcctttgggactttgggataatcagaaacaattgctgagccccc 623

                                                                       
Query: 423 agtctagtgtgtgcctctgcctagaccaacctgccaattctttagtggcacagccacaca 482
           || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 624 aggctagtgtgtgcctctgcctagaccaacctgccaattctttggtggcacagccacaca 683

                                                                       
Query: 483 ttttgtattggaggctcccatgctggggtctcgggagatctttacttgtgtgtgtgtgtg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttttgtattggaggctcccatgctggggtctcgggagatctttacttgtgtgtgtgtgtg 743

                     
Query: 543 tgtgtgtgtg 552
           ||||||||||
Sbjct: 744 tgtgtgtgtg 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 953
Length adjustment: 10
Effective length of query: 542
Effective length of database: 943
Effective search space:   511106
Effective search space used:   511106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)