BAC Information

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BAC

Clone NameMSMg01-078K09
Chromosome2 (Build37)
Map Location 35,535,739 - 35,536,140
singlet/doubletsinglet
Overlap genenone
Upstream geneGapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194
Downstream geneDab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078K09.T7 (MSMg01no078_k09.b1)MSMg01-078K09.TJ (MSMg01no078_k09.g1)
ACCAG299934AG299935
length717717
length of high quality
(start - end)
406 (44 - 449)246 (76 - 321)
definitionCHROMAT_FILE: MSMg01no078_k09.b1 PHD_FILE: MSMg01no078_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:02 2005CHROMAT_FILE: MSMg01no078_k09.g1 PHD_FILE: MSMg01no078_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTTTTTCACCTTGACAGAAGTCCTGGGGATCTTTGTTTGGCTTGGC
CAGAGTTGCAGAGATGCCAGAATCACTGCTAACCTTGCCTGGACACTCCA
AAGGCCTAGCCTTTAAACAAAGGTCATACAGTGAATGATCTCAGAGACCT
ACACACAGGCTGAAGGTTACCAACTCATATGTCCTGCTGTCAGAGTACCC
ACCTGTGGGAGGGGCCTAGGATCGAAGTGAATCAGTTTGTACTGGCTGGG
GGCAGGGCTTTGCAAGGAAGCAGTGTTGCAATCGGGATATCCTGGGCGGG
TAAAGCTGGGGCTGACCTTATTTATCTGCCGTTTTAGTCTTTATCCACAC
ACATTGGCAGGTCTTTGCTGTGTGTCAGAACCCACTGTGACCCTAGGAGA
GGGCTGGTATGTTGTGTCCCCTGCTTCGCTCATGCCACATACGAACTCTA
TCTTAGCTTCTTCCCCGTTGCGCTGTACCTTTCTTTATTCCGCATCGTTC
GCGCCTTTCCCTTATCTTTACTTGCTCGTCTCACACTTCCCGTATTTCCA
CCTACCCATCGTAATACATATATCTCCACGTTTCTCTTCTCTCTCCTTTT
TTATTCTTTCATTCCCTTTTATTTCTCTCCTTTTCCCTCCTCCCATTCTC
CCTCTTCTCTCTTACTA
NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCTGGTACTGGATAATGTTTTAAA
TCATTTCTTTTTAAAATTTTTATTTATATTGGTGTTCTGTCTCCACGTAT
GTCCATGTGAAGGTTGGTTCCCCTGAAACTGGAATTATAGACAGTTGTGA
GCTGCTGTGTGGGTACTGGAATTTGAACCTGGGTCCTTTGGAAGGGCAGT
CAGTGCTTTTAATTGCTGAGCCATCTTTCCAGTCCTCTTAAATAGTTTCT
TAATGTAAAGATGATCTGGAATACTAATAATAGAACAGAAAACACACCAA
AGGTCTGAAAAAGCAGGCACAGTACCACGTACACAAACTGGGTTGCCCCT
TTGGGCATTATCTCTGCCAGCCTGGAGCTTGGGCCTGATGTTTGGAGAAG
GGAGATGAAATCTAGACCCTAATCAGTGAAGGAGTCAGACCTGATATGCC
CATGTAGCTAGAATCCCTGAGGTCTCGCACCCTTATCGTAAGACTTGCAG
AACACCCTCCCCTATTGCACTCCCGTATAACTATTTATTCCTGTTTTGGC
CCTGTACCTACAACATTTGTTTCCCCCCTTTTAATTCCCCTATCCCTTTT
TTCTTGCACTTTTTGTTCCTTTTTTTTTACCTTTTTTCTCTGCTTTTCGT
AACTCCATACTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_k09.b1 MSMg01no078_k09.b1 CHROMAT_FILE:
MSMg01no078_k09.b1 PHD_FILE: MSMg01no078_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:02 2005
         (406 letters)



>mm_chr2_35535535_35536340
          Length = 806

 Score =  746 bits (386), Expect = 0.0
 Identities = 398/402 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctttttcaccttgacagaagtcctggggatctttgtttggcttggccagagtt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctttttcagcttgacagaagtcctggggatctttgtttggcttggccagagtt 264

                                                                       
Query: 65  gcagagatgccagaatcactgctaaccttgcctggacactccaaaggcctagcctttaaa 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcagagatgccaggatcactgctaaccttgcctggacactccaaaggcctagcctttaaa 324

                                                                       
Query: 125 caaaggtcatacagtgaatgatctcagagacctacacacaggctgaaggttaccaactca 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 caaaggtcatacagtgaatgatctcagagacctacacacaggctgaacgttaccaactca 384

                                                                       
Query: 185 tatgtcctgctgtcagagtacccacctgtgggaggggcctaggatcgaagtgaatcagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatgtcctgctgtcagagtacccacctgtgggaggggcctaggatcgaagtgaatcagtt 444

                                                                       
Query: 245 tgtactggctgggggcagggctttgcaaggaagcagtgttgcaatcgggatatcctgggc 304
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 tgtactggctgggggcagggctttgcaaggaagcagtgttgcaatcaggatatcctgggc 504

                                                                       
Query: 305 gggtaaagctggggctgaccttatttatctgccgttttagtctttatccacacacattgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggtaaagctggggctgaccttatttatctgccgttttagtctttatccacacacattgg 564

                                                     
Query: 365 caggtctttgctgtgtgtcagaacccactgtgaccctaggag 406
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caggtctttgctgtgtgtcagaacccactgtgaccctaggag 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)