BAC Information

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BAC

Clone NameMSMg01-079F03
Chromosome2 (Build37)
Map Location 155,073,921 - 155,274,250
singlet/doubletdoublet
Overlap geneDynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6
Upstream gene5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931
Downstream geneLOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079F03.T7 (MSMg01no079_f03.b1)MSMg01-079F03.TJ (MSMg01no079_f03.g1)
ACCAG300427AG300428
length682677
length of high quality
(start - end)		606 (50 - 655)597 (73 - 669)
definitionCHROMAT_FILE: MSMg01no079_f03.b1 PHD_FILE: MSMg01no079_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:55 2005CHROMAT_FILE: MSMg01no079_f03.g1 PHD_FILE: MSMg01no079_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,273,806 - 155,274,250)(155,073,921 - 155,074,517)
sequence
CCAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCAACAACAACCTGCCCTATAGATCTGAGAACGTCTAGTGT
CAGTAGCTGTAGTTTTGCTACCTACTGTGTGTGTCATCAACAATAAGCTT
CATTATGTAGAGTGCAAACTCTAGCTCAGTGAGCCCCTAAATTTGTCTTT
ACATTGAAATCGCCTGGTATTCTTGAATTTTTGATTACAACCTGTACCCA
TTTTTAGACAAAGTAATTGTTCAAATTATTGAATTTTAAAAAAATATTTA
TTTATTTATTTATTTATTTATTTATTTATTTATTTAATGTATGTGAGTAC
AGTTGCTCTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGA
TAGCTGTGAACCACCATGTGGTTGTTGGGAATTGAACTCAGGACCTCTGG
AAGAGCAGACAGTGCTCTTAACCACTGAGCCATCTCTCCGGTCCAAATTT
TTATTTTATATATAAAAACATACACATATAATTTACATGCCTATACATAC
CTCCCCTCCCCACCCCCTTCATTTGCTTTTTCTTTTGTTGTCCTTGCTCA
GGCTAAGCCTTGCATCAAACATCAGCCCTGAGATTTGCTTTTTTTGATGG
TGATAATGATTGCAGGTGTTTGTTTTTCCTCT

AAACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATAAACATGTGGGACATGGAAGGGTTG
ATCAGTTCTGCCTGGACAATGAACAAAGATTTCTCAGAAAAAGGAATGTT
GAAGCTGAATCTTAAGAGCCAGGAAAATATGAGTCAGAAGGGTGGAAAAG
CTGTTTCTATATGAAAAAGAATTTATAGTCCTGTCTCCGACCCATGTAGC
CAGCTCCCTACCACCATTGGAGCAGATTGCTATTTTGAGTCACCAGTAAC
AAGCTTGGCTGGTAGTATAAGCATGCCTGTGTTTAGGCCTTAGGATCACT
CTCAGTGTAATGAGATGCTCACAGTGGGAGGAGCCCACAAGGGTGGGAAC
TACAGAGGGGAGGCACAGGGATGCCTCCTACTCTGCCTCCTCTAACTCAC
ACAGGCTGGAATGACCTGGCCTGGAAGGAAGAGGTCCAGTCTCGTCTTAC
AAAGTGACTGCTTGTGGCTCCCCTGAAGCCTAGAGCTTCATAGTTTAACA
CAGTAAGCTTTGTAACATAGTGTGATTTATTGGCCTCACAAAGCAACTTT
ACTACATCCTGGCTATCCAAATGGCTCGGCCAGTAAAGGCTCTTGTTGCT
AACCCTGACCACCTGAGCTCGAGTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_f03.b1 MSMg01no079_f03.b1 CHROMAT_FILE:
MSMg01no079_f03.b1 PHD_FILE: MSMg01no079_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:55 2005
         (606 letters)



>mm_chr2_155273806_155274811
          Length = 1006

 Score =  833 bits (431), Expect = 0.0
 Identities = 440/445 (98%), Gaps = 4/445 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccaacaacaacctgccctatagatctgagaacgtctagtgtcagtagctgtagt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaattcccaacaacaagctgccctatagatctgagaacgtctagtgtcagtagctgtagt 386

                                                                       
Query: 65  tttgctacctactgtgtgtgtcatcaacaataagcttcattatgtagagtgcaaactcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgctacctactgtgtgtgtcatcaacaataagcttcattatgtagagtgcaaactcta 326

                                                                       
Query: 125 gctcagtgagcccctaaatttgtctttacattgaaatcgcctggtattcttgaatttttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctcagtgagcccctaaatttgtctttacattgaaatcgcctggtattcttgaatttttg 266

                                                                       
Query: 185 attacaacctgtacccatttttagacaaagtaattgttcaaattattgaattttaaaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attacaacctgtacccatttttagacaaagtaattgttcaaattattgaattttaaaaaa 206

                                                                       
Query: 245 a----tatttatttatttatttatttatttatttatttatttatttaatgtatgtgagta 300
           |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atatttatttatttatttatttatttatttatttatttatttatttaatgtatgtgagta 146

                                                                       
Query: 301 cagttgctctcttcagacacaccagaagagggcatcagatctcattacagatagctgtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 cagttgctctcttcagacacaccagaagagggcatcagatctcattacagatagctgtga 86

                                                                       
Query: 361 accaccatgtggttgttgggaattgaactcaggacctctggaagagcagacagtgctctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  accaccatgtggttgttgggaattgaactcaggacctctggaagagcagacagtgctctt 26

                                    
Query: 421 aaccactgagccatctctccggtcc 445
           |||||||||||||||||||||||||
Sbjct: 25  aaccactgagccatctctccggtcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no079_f03.g1 MSMg01no079_f03.g1 CHROMAT_FILE:
MSMg01no079_f03.g1 PHD_FILE: MSMg01no079_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:55 2005
         (597 letters)



>mm_chr2_155073721_155074717
          Length = 997

 Score = 1154 bits (597), Expect = 0.0
 Identities = 597/597 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataaacatgtgggacatggaagggttgatcagttctgcctggacaatgaacaaagattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaacatgtgggacatggaagggttgatcagttctgcctggacaatgaacaaagattt 260

                                                                       
Query: 61  ctcagaaaaaggaatgttgaagctgaatcttaagagccaggaaaatatgagtcagaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagaaaaaggaatgttgaagctgaatcttaagagccaggaaaatatgagtcagaaggg 320

                                                                       
Query: 121 tggaaaagctgtttctatatgaaaaagaatttatagtcctgtctccgacccatgtagcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaaaagctgtttctatatgaaaaagaatttatagtcctgtctccgacccatgtagcca 380

                                                                       
Query: 181 gctccctaccaccattggagcagattgctattttgagtcaccagtaacaagcttggctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctccctaccaccattggagcagattgctattttgagtcaccagtaacaagcttggctgg 440

                                                                       
Query: 241 tagtataagcatgcctgtgtttaggccttaggatcactctcagtgtaatgagatgctcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagtataagcatgcctgtgtttaggccttaggatcactctcagtgtaatgagatgctcac 500

                                                                       
Query: 301 agtgggaggagcccacaagggtgggaactacagaggggaggcacagggatgcctcctact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgggaggagcccacaagggtgggaactacagaggggaggcacagggatgcctcctact 560

                                                                       
Query: 361 ctgcctcctctaactcacacaggctggaatgacctggcctggaaggaagaggtccagtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgcctcctctaactcacacaggctggaatgacctggcctggaaggaagaggtccagtct 620

                                                                       
Query: 421 cgtcttacaaagtgactgcttgtggctcccctgaagcctagagcttcatagtttaacaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgtcttacaaagtgactgcttgtggctcccctgaagcctagagcttcatagtttaacaca 680

                                                                       
Query: 481 gtaagctttgtaacatagtgtgatttattggcctcacaaagcaactttactacatcctgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtaagctttgtaacatagtgtgatttattggcctcacaaagcaactttactacatcctgg 740

                                                                    
Query: 541 ctatccaaatggctcggccagtaaaggctcttgttgctaaccctgaccacctgagct 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctatccaaatggctcggccagtaaaggctcttgttgctaaccctgaccacctgagct 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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