BAC Information

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BAC

Clone NameMSMg01-079F07
Chromosome2 (Build37)
Map Location 145,588,840 - 145,589,167
singlet/doubletsinglet
Overlap genenone
Upstream geneDtd1, 1700010M22Rik, Slc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810
Downstream geneRin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik, LOC668918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079F07.T7 (MSMg01no079_f07.b1)MSMg01-079F07.TJ (MSMg01no079_f07.g1)
ACCAG300435AG300436
length704705
length of high quality
(start - end)
641 (64 - 704)324 (323 - 646)
definitionCHROMAT_FILE: MSMg01no079_f07.b1 PHD_FILE: MSMg01no079_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:56 2005CHROMAT_FILE: MSMg01no079_f07.g1 PHD_FILE: MSMg01no079_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCN
CAAAATAACGAAATAGCCACTGGTAGGGACCATCTGCATTTTCACATGAC
CTGGACATTAGAGACAGTGTGGTGGCATTTTAATGGATGGCACGAGTCAC
AGCTGTTGTAAGAGAGCCCCTGGGAGCTATAGTAACATCACCCATTCCCC
ATTCATTTGGTTCTTGGATTCCAGCTTTGTGTTAGAAAACATCAGTGATG
TTTGGGAAAAGGAAAGATGGTTAGAGAGTCTACTGTAGAAAGGCTGATGT
GGAAAGCTGTTGGGTCTCACTTTTCACTAGGTTATGTGGCCCAGGGATGA
TGCAATCCTGAGGTAATATTCAGACGAGTTGCTTCAGAAAGGCCAGGAAA
TGCCACTGTGGGAGTGGGACAGTGAGACAGGATGAGGAGGTGAACCAGCA
GCAGCTGTATTAACAATCCAGCTATCATACAGACACCTAGAGCTACATCC
CTACAGAGGGACATTGTGTGAGGCTTTCTTGGGGAGATGCTATTCACTCT
AGATAGAGCAGCCATGACAAGCCAAAGTAACACCACAGTCCGGCTCGATG
AAGCACTGAGTCTCTGGGGTTGCTTACAGGAGCGTGGGTGAAGGGCTACT
TACAGAGGCGTGGATGACTCAAGGGCAGCTGCATCCCTGANAGCCCACTG
ATAG
TGAAGTGGGAGGCCTGGCGGCGCCTGGATCGGACCTGGGGTGAACTATAG
AAGGTTTCGAAAAATTCTCATTCCTTCTGTTTCCATCTCCCAAGTGATAG
AATTACAGGTATGTCTACCATGTATGGCTTGATTTTTCTCTTGTGTTTAA
AATACTGCGCTCAAACAAACAAACAACCTCCCACTGCAGGAAACTGTGGC
GGATACCACTAGGAAGAAGCAATCAGTCAGCAGAACCCATCACACAACAA
AGACAGCCTCCTGATACTACCGTGTCTGACATTTTATATGGCTGTTTGGG
TGCAGGACATGATCACTAGGCCTCATGTTTATGACACAAGCATTTTACCA
ACTGAGCCATCTCCCCAGCCCCTAATAAATGCTTTTAAAAGGTATAAGAT
TTGTTAGAGAACACATTAGTGGGTGTGTGTTTTGATAATTAATATGCAGT
ATTTAGAATGTGCTAGAAGTGGCCAGGCATGTAGTTCAGTGACAAAGCAT
GTGTAAGACCTTAGACAAAGCATGGGCTGTGTTTAGCATGTATAAGACCT
TAGACAAAGCATGTGTTTGATGCATTTAAGATTCTAACTCTTCAGCATCC
CCTAAGAAATAAAGAAAAGAAAAAGATAGATGCAGTGATTTAAAGATCCA
TCCATCCATCTACCACACCCCTGTGGATACCTCCTTTTCAAATCCACTTC
TCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_f07.g1 MSMg01no079_f07.g1 CHROMAT_FILE:
MSMg01no079_f07.g1 PHD_FILE: MSMg01no079_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:56 2005
         (324 letters)



>mm_chr2_145588588_145589315
          Length = 728

 Score =  551 bits (285), Expect = e-161
 Identities = 316/329 (96%), Gaps = 6/329 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgtttatgacacaagcattttaccaactgagccatctccccagcccctaataaatgc 60
           ||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 580 tcatgtttatgtcacaagcgttttaccaactgagccatctccccagccccttataaatgc 521

                                                                       
Query: 61  ttttaaaaggtataagatttgttagagaacacattagtgggtgtgtgttttgataattaa 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ttttaaagggtataagatttgttagagaacacattagtgggtgtgtgttttgataattaa 461

                                                                       
Query: 121 tatgcagtatttagaatgtgctagaagtggccaggcatgtagttcagtgacaaagcatgt 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tatgcagtatttaggatgtgctagaagtggccaggcatgtagttcagtgacaaagcatgt 401

                                                                       
Query: 181 gtaagaccttagacaaagcatgggctgtgtttagcatgtataagaccttagacaaagcat 240
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 400 -taagaccttagacaaagcatgggctgtgtttagcatgtataagactttagacaaagcat 342

                                                                       
Query: 241 gtgtttgatgcatttaagattctaactcttcagcatcccctaagaaataaagaaaag--- 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 341 gtgtttgatgcatttaagattctaactcttcagcatcccctaagaaataaagaaaagaaa 282

                                        
Query: 298 --aaaaagatagatgcagtgatttaaaga 324
             ||||||| |||||||||||||||||||
Sbjct: 281 aaaaaaagacagatgcagtgatttaaaga 253


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 728
Length adjustment: 9
Effective length of query: 315
Effective length of database: 719
Effective search space:   226485
Effective search space used:   226485
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)