NNCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCG
GAATTCATATCTTTACCACATAAATCCATTAACTAAAGTCCAGCATGGAA
ATGAACAGTTTATTGTAGGTGCAAAGATAGAAGATAAAATATTGACTGGG
TTTATCTATACAAAACTTCAGTGTTAACTTAGACCTAAGAATTATAGTTT
AAACCCTCAATGAACCTGTGGCACTATTGACAGAAAATAAATGTCTAGTT
AGAATACCAGTCTTAATGGAAACACATGTAATCATCTCTATTGTAACTTC
TTGTTCAATTTATGATTTGAATTGATGTTTGAACTTATTGGAACTTTTGG
AATACAATAGGATCTATTCTCCTGAAAAAGCACAAAGTATTAGGAAAGAT
GACTGTAAAGAGGCAGAAAGAGAATAGGCTAGAAGCATTACAGAGATGAA
GAACTGAGCAGATGAAGACAGACTAAGAAGAGGAGCTCCAGAGAAAGGAA
AAAGCAGTAGGCAGGCTTTTGTTCCAATGGGACAGATTTATAAAATTCAT
TTAGCAATGAATCAGAAGCATTTTCTTTCTCTAGACCTAAAGTCGAAGCT
TATTTCTCATCCAGAATGAGTGGGTTCTTTCTGTGCTGCCACTATGGAGC
TTGCTCGTGAGGGCATTTGCTTCATCAACCAA

CCCATGATAGGNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATAATACTGATCCATCCATTAAATGTTGC
CTGTTGAAAGTAAAATATATGTGAATCTTATAGAAAACCTTTTCTAGTGA
ATAAAAAGCAAACCTTATTTCAATTTTGTTTAGTACTCTAGAACACTGAA
TGGTGGGGTTGGCCACACTTCAATATAATGTGCAACTAAGATATTTAAAA
CATTTAATGTCAGATTGTTATTTTTACCTAATTTATTTCAAATGCATAAA
ATAATTGATATGGTTTCAATAGACAAAGGAACCTAACATTAAAATTCTAA
TTACATGTTAATAAACTTCTAAGTTGTACTTGTGGTCTTACTCATGTGAT
TTGAATGGTGGACCCTACATATCTGCTGGATATCGGACTACTGAGTAACC
ATCACTCAGCATTTTAAGTGATGTAAAGACAATAGCCATTCAAGCCAGAC
TGAAGGGCTGTGAGCCTGTTACCAATGAGCAATGGTGGAAATCATCAAGT
CCAGGCATTTCCTCCCCGTGTCTGCACTGTCACCCCACTTGCTTCTCCCA
CAAGAGACTCTACCTTACTGAATCTTGAAAGAAGCCTAGAACAGCATGCA
TCTCATAATTATTATCTATCAGTTAATAATCACACAGCN

Query= MSMg01no079_l04.g1 MSMg01no079_l04.g1 CHROMAT_FILE:
MSMg01no079_l04.g1 PHD_FILE: MSMg01no079_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:23 2005
         (566 letters)



>mm_chr2_66521149_66522114
          Length = 966

 Score = 1064 bits (550), Expect = 0.0
 Identities = 562/566 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatactgatccatccattaaatgttgcctgttgaaagtaaaatatatgtgaatcttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatactgatccatccattaaatgttgcctgttgaaagtaaaatatatgtgaatcttat 260

                                                                       
Query: 61  agaaaaccttttctagtgaataaaaagcaaaccttatttcaattttgtttagtactctag 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 agaaaaccttttctagtgaataaaaagcaaaccttatttccattttgtttagtactctag 320

                                                                       
Query: 121 aacactgaatggtggggttggccacacttcaatataatgtgcaactaagatatttaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacactgaatggtggggttggccacacttcaatataatgtgcaactaagatatttaaaac 380

                                                                       
Query: 181 atttaatgtcagattgttatttttacctaatttatttcaaatgcataaaataattgatat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 atttaatgtcagattgttatttttacctaatttatttcaaatgcataaaataattggtat 440

                                                                       
Query: 241 ggtttcaatagacaaaggaacctaacattaaaattctaattacatgttaataaacttcta 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtttcaaaagacaaaggaacctaacattaaaattctaattacatgttaataaacttcta 500

                                                                       
Query: 301 agttgtacttgtggtcttactcatgtgatttgaatggtggaccctacatatctgctggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttgtacttgtggtcttactcatgtgatttgaatggtggaccctacatatctgctggat 560

                                                                       
Query: 361 atcggactactgagtaaccatcactcagcattttaagtgatgtaaagacaatagccattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcggactactgagtaaccatcactcagcattttaagtgatgtaaagacaatagccattc 620

                                                                       
Query: 421 aagccagactgaagggctgtgagcctgttaccaatgagcaatggtggaaatcatcaagtc 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagacagactgaagggctgtgagcctgttaccaatgagcaatggtggaaatcatcaagtc 680

                                                                       
Query: 481 caggcatttcctccccgtgtctgcactgtcaccccacttgcttctcccacaagagactct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caggcatttcctccccgtgtctgcactgtcaccccacttgcttctcccacaagagactct 740

                                     
Query: 541 accttactgaatcttgaaagaagcct 566
           ||||||||||||||||||||||||||
Sbjct: 741 accttactgaatcttgaaagaagcct 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)