BAC Information

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BAC

Clone NameMSMg01-080B10
Chromosome2 (Build37)
Map Location 104,821,482 - 104,821,883
singlet/doubletsinglet
Overlap geneCcdc73
Upstream geneLmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4
Downstream geneGa17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080B10.T7 (MSMg01no080_b10.b1)MSMg01-080B10.TJ (MSMg01no080_b10.g1)
ACCAG301014AG301015
length693695
length of high quality
(start - end)
407 (44 - 450)295 (75 - 369)
definitionCHROMAT_FILE: MSMg01no080_b10.b1 PHD_FILE: MSMg01no080_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:53 2005CHROMAT_FILE: MSMg01no080_b10.g1 PHD_FILE: MSMg01no080_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTAAGGATCTCGAAAAGGCAATGAAAATTGATACTAAGAAAAGGCAA
TTTTGTGATCCATCATTCTTGAAGTGAAATGTTGCTTTGCAACTTTAATT
TACGTCATTTTCTACAATTGTTTTACACATTTTATCAAAATTAGCATTTA
GTGTAAAAGAAGCAAATGTGACAAAGGAAGTAGCTGTTTACAGTATATTA
TCTCCTAACTAGTACACAGTAACCTACTCCTGCCATGGCTCTGACCCAGC
TCAACAGAACTCCTGGGGCTTTGCTCACCTGCCATGGCTTACACATTCTA
AGTCACTAAGATACACCGAATCATTTTATTAAAACACAAATTAATTTCCT
TGTCACATATTAATACCTATTCTATATCGTCATATTGACTTTATATGTAT
ATATAAAACACATATGCATATAGTCTTCCATGCATGAAAACCTCTGAGGG
AATTGTATTAAATTTAGTTTTAAAAAATATACTCACTTTGGGCGAAATAT
GATTGCTTGATGAAAATGTGTCTGACTTATCAACTTTGCAGCATTTTCTT
ACCATTCAACAGTCATTTTATATGTCTGCCAACATTTACCACACTTAATT
ATTTTATAACCTATTACACGTACATGTTCCTTCCTAGTTTTTT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGGCAGAAACTCAAGCAAGGCAGGA
ACCTGGAGACAGGAACAGAAGCAGAGGCCATGAAGGAACGTTGTTTACTG
GCTTGTTCCCTACGGCTCTCTCAGCTTGCTTTTTCACACAACCCAGACTT
CCTGCCCATTGCCAACAGTGGGTTGTGTGTTCTCACATCAGCATTTACCA
AGAAAGTGCCCACAGACATGCCTAAAGTTCACCCTGATAGAGGTGGTTAC
CAGGTGACTCTGGCTTCTGTCAACCTGACCAAAAAAACTTACCAGCATTT
TATGTTCCGTTGTCAATGCGCGCCGCAGCGTTTATGTGGATATTATAGAA
ACCCTCATCCGGTCGGTTTTCTCCTCCGCTGTGTAGTTCCATGTGTGGCA
GGTATTGAACTCTGGTTGTCAGGTTTGGCTGCGCACGACCTTTCTACTTG
CTGCATCTTTCTTGTTGCTCTACACATACCAAGCCCACACATAATTGAAT
TCAAAGCTCCTGGTTCAAAATCAGCCACTATAACTTGATTGACAATAACT
GAATTAACCCTAGAAGCATATTTACCTCTCAGTTTCACTTAACACAACCT
CCCCGCATAATTCTACACAACTTTACCGAACGAATATTTACACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_b10.b1 MSMg01no080_b10.b1 CHROMAT_FILE:
MSMg01no080_b10.b1 PHD_FILE: MSMg01no080_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:53 2005
         (407 letters)



>mm_chr2_104821278_104822083
          Length = 806

 Score =  733 bits (379), Expect = 0.0
 Identities = 397/403 (98%), Gaps = 1/403 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaaggatctcgaaaaggcaatgaaaattgatactaagaaaaggcaattttgtg 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaattcctaaggaact-gaaaaggcaatgaaaattgatactaagaaaaggcaattttgtg 548

                                                                       
Query: 65  atccatcattcttgaagtgaaatgttgctttgcaactttaatttacgtcattttctacaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 atccatcattcttgaagtgaaatgttgctttgcaactttaatttacgtcattttctacaa 488

                                                                       
Query: 125 ttgttttacacattttatcaaaattagcatttagtgtaaaagaagcaaatgtgacaaagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttgttttacacattttatcaaaattagcatttagtgtaaaagaagcaaatgtgacaaagg 428

                                                                       
Query: 185 aagtagctgtttacagtatattatctcctaactagtacacagtaacctactcctgccatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aagtagctgtttacagtatattatctcctaactagtacacagtaacctactcctgccatg 368

                                                                       
Query: 245 gctctgacccagctcaacagaactcctggggctttgctcacctgccatggcttacacatt 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gctctgacccagctcaacaggactcctggggctttgctcacctgccatggcttacacatt 308

                                                                       
Query: 305 ctaagtcactaagatacaccgaatcattttattaaaacacaaattaatttccttgtcaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 307 ctaagtcactaagatacaccgaatcattttattaaaacacaaattaatttctttgtcaca 248

                                                      
Query: 365 tattaatacctattctatatcgtcatattgactttatatgtat 407
           |||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 247 tattaatagctattctatatcgtcacattgactttatatgtat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 806
Length adjustment: 9
Effective length of query: 398
Effective length of database: 797
Effective search space:   317206
Effective search space used:   317206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)