BAC Information

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BAC

Clone NameMSMg01-080B20
Chromosome2 (Build37)
Map Location 28,482,417 - 28,482,786
singlet/doubletsinglet
Overlap genenone
Upstream geneRxra, Col5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b
Downstream geneTsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080B20.T7 (MSMg01no080_b20.b1)MSMg01-080B20.TJ (MSMg01no080_b20.g1)
ACCAG301034AG301035
length704704
length of high quality
(start - end)
367 (62 - 428)343 (67 - 409)
definitionCHROMAT_FILE: MSMg01no080_b20.b1 PHD_FILE: MSMg01no080_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:55 2005CHROMAT_FILE: MSMg01no080_b20.g1 PHD_FILE: MSMg01no080_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCCGTATACGACTCCTATTCCGAGAGGATCCGCGGAATTCACTG
GACTGCGTTGTCTGGGTGGAGAAGAAACGTCAAGGTGGCATAGCATTCAG
GGTATGGCATTATGACTGTCACAGCTCTCAGTCATCACTACCAGAGAAAG
ATAGCAAAAAGGGGGAAAACCCTTTGGGGAAAAGAGCAGGAATGAATTTA
AAGATGCAGGCAAGGCAGAGACAAGAAAAACAGCCATTTAGAGGATTAGC
ACCACTACAGAGAAGACTTGGCTCCAGGGAGATAGCTTCATGGTTTGATC
AAGTTCCTGTCACCAAGTATGACAGCTTCCGTTCAGTCTCCTGGACCTAC
ATGGTGGAAGCAGAGAACCAATACCCACAAGCTTCCTATAACCTTCAACA
GGTGACATGGCAGGTACTTACCCACACATTAGATAGACAGACAGACTGAC
CGACAGACAGACAGACAGACAGAGTCTTTCCTCGACATAGATTCTGGAAA
TTGAACTCTGGCGCACTACGCTTGTGTGGCATGTGTCTTTTTCCACTGAG
CCATCTCACCAGCCCTACATGTGCATGTTTGTGTGCATGCAACCCCACCA
TCATCATCTTCATCATCCTCAATACCTAAATCAACTTCTTAAAGAGAAGC
CTCCTATCCGTTTGTGCTGCCGCACGCCCTTATTCCCTCCCCCGCCAGCT
ATAG
TGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCATTAGTTGGAATAAAGTTAAAAAACAAAACC
CAGAAGCAGAGAGGTGGTTCAGTGGGTGAAGCATTTACCTGACAAACCTG
AGGACATGAGTGTGGATCCCCAGCCTGACACAGCAGCATGCATCTCTTAC
CCTAACACTGAAGGACAGATGTCAGTGGATGCCAGGGGCTAGTCAGTCCA
GCCAAAACCGGAACTCCAGCCTCCAGGTTCCGTGAGGAACCCTGCCTCAG
AACAAGGTGGATAGCAATAAAAGAAGACAACAGATGTCAGCTTCTGGTCT
GCACACGTGCATACAAGCACACATACACATGCACACTCATGCACATATTC
ACACATGCCTGCACTCTCGCACACGAGCATGCATGGCAGATAACAGCCTC
ACTGTGCACACCCCGGTACAGGAGCACACATACACTGAAAAAATACTCTA
GATCACCGCACTTGCTGGTTTTGTGTGAACTTGACTCAAGCTGGAGTCAT
CGGAGAGGAAGGAGTCTCAGTTGAGGAAATGTCTCTATGACCTCTGGCTG
TAAGGCCCCTTCTCAATTACTGATCAATGAGGGAAGGCTCAGTTCATTAT
GGATGGATGCTGCCATCCTTTGTCTGGCGGTCATGGGTCCAGTTTTGTGT
GCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_b20.b1 MSMg01no080_b20.b1 CHROMAT_FILE:
MSMg01no080_b20.b1 PHD_FILE: MSMg01no080_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:55 2005
         (367 letters)



>mm_chr2_28482265_28483031
          Length = 767

 Score =  619 bits (320), Expect = 0.0
 Identities = 357/370 (96%), Gaps = 3/370 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggtggagaagaaacgtcaaggtggcatagcattcagggtatggcattatgactgtca 60
           |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 522 ctgggtggagaagaaatgtcaaggtggcatagcattcagggtatggcattgtgactgtca 463

                                                                       
Query: 61  cagctctcagtcatcactaccagagaaagatagcaaaaa--gggggaaaaccctttgggg 118
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 462 cagctctcagtcatcactaccagagaaagatagcaaaaagtgggggaaaaccctttgggg 403

                                                                       
Query: 119 aaaagagcaggaatgaatttaaagatgcaggcaaggcagagacaagaaaaacagccattt 178
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 402 aaaagagcaggaatgagtttaaagatgcaggcaaggcagagacaagaaaaacagctgttt 343

                                                                       
Query: 179 agaggattagcaccactacagagaagacttggctccagggagatagcttcatggtttgat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agaggattagcaccactacagagaagacttggctccagggagatagcttcatggtttgat 283

                                                                       
Query: 239 caagttcctgtcaccaagtatgacagcttccgttcagtctcctggacctacatggtggaa 298
           ||||  ||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 caagggcctgtcaccaagcgtgacagcttccgttcagtctcctggacctacatggtggaa 223

                                                                       
Query: 299 gcagagaaccaatacccacaagcttcctataaccttca-acaggtgacatggcaggtact 357
           |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 222 gcagagaaccaatacccacaagcttcctataaccttcacacaagtgacatggcaggtact 163

                     
Query: 358 tacccacaca 367
           ||||||||||
Sbjct: 162 tacccacaca 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)