BAC Information

Click to search

BAC

Clone NameMSMg01-080C04
Chromosome2 (Build37)
Map Location 86,198,761 - 86,199,353
singlet/doubletsinglet
Overlap genenone
Upstream geneGA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056
Downstream geneOlfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080C04.T7 (MSMg01no080_c04.b1)MSMg01-080C04.TJ (MSMg01no080_c04.g1)
ACCAG301050AG301051
length729701
length of high quality
(start - end)		345 (42 - 386)592 (70 - 661)
definitionCHROMAT_FILE: MSMg01no080_c04.b1 PHD_FILE: MSMg01no080_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:57 2005CHROMAT_FILE: MSMg01no080_c04.g1 PHD_FILE: MSMg01no080_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGG
TCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCAAGA
AAGAGAGACCCTTGGTCCTGCGAAGATCATATGCCCCAGTACAGGGGGGT
GCCAGGAAGCAGGAGTGGGTGTGTTGAGGAGCAGGGTTGTTCAGGCCCTC
TTTTTTTCCCCTTCCCCTTTTTCCCCTTTATTCCTATATTTTCTTCCCTC
CATTCTTTATTCCATTTCCACTTATTTTATTCCTCCCCCTCCCTCTCTTT
CCCTTCCTTTTCCCTCTTTATTTCTTCTTTTTCTTCCCCTCCCTTCCCCT
CACTCTCTTTTTCTTTCCCCTATTTTTTTCTTTTTCACCTCTATCTCCCT
TTTCTTTCCCCTTTATTTTCCCCTTTTTATTTTTTTTCTCTCCCCCCCTT
CCCCCCCCCCTTTTCTTTTTTTCTCCCTTTCCTTCTTCCCCCTTTTTCCC
TTTTTTTTTTTTTTTTCCCTCCCTTTTTT

TAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGGACTTCATATTCTCTAAATGGAAATTTTA
GTTAAGTGGAAAAAGGTTATAAATTTTCCTATCTAAGTTGGCAAGGGTGC
TATGTTCCTGGCTCCTACTCCTTAAGGATATAAAACTGCCCATATATTTA
AATTAAATTATTTGTAAAGCTTCATGATGTACCTTTAAAATAAGTGATAT
GTCTGTAATTTGTGATATTAAAATCAAAATATTCTAAATTATCTTCAAAT
TTCAATCATTTTAATGGTACCAATTTTATGCTACTTCTTTCCTTCATTCA
AACCTTGTCCTATAACCACACCATTATTTGTCAAACACATTGCCTCATTT
TTCACTAATTGTTAATGCATGGATATATGTGAGGGATCCTTTTAGTCAAT
AGTTCACACCCTTTCAATTCTGTAATCACCAAATTAGTAGCCTTATTCAG
TGACATGGCTTCTTTCAGTTTTCAACTATCTGAAAATGTGACGTATTTTT
GTTTCATGCATGTCACTCACTATATTAAACTCTATTTTGCTTCACATTGC
TACAATCAGNACAAAAGGATCAATATATTCTCCTTCTAACAAGATATTGA
TATATCATCTTTGTAGAATTTGCCAATGAATGTGATGTTTTATATACAAC
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_c04.g1 MSMg01no080_c04.g1 CHROMAT_FILE:
MSMg01no080_c04.g1 PHD_FILE: MSMg01no080_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:57 2005
         (592 letters)



>mm_chr2_86198562_86199553
          Length = 992

 Score = 1110 bits (574), Expect = 0.0
 Identities = 588/593 (99%), Gaps = 1/593 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggacttca-tattctctaaatggaaattttagttaagtggaaaaaggttataaattttc 59
           ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 200 tggacttcaatattctctaaatggaaattttagttaagtggaaataggttataaattttc 259

                                                                       
Query: 60  ctatctaagttggcaagggtgctatgttcctggctcctactccttaaggatataaaactg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctatctaagttggcaagggtgctatgttcctggctcctactccttaaggatataaaactg 319

                                                                       
Query: 120 cccatatatttaaattaaattatttgtaaagcttcatgatgtacctttaaaataagtgat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cccatatatttaaattaaattatttgtaaagcttcatgatgtacctttaaaataagtgat 379

                                                                       
Query: 180 atgtctgtaatttgtgatattaaaatcaaaatattctaaattatcttcaaatttcaatca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atgtctgtaatttgtgatattaaaatcaaaatattctaaattatcttcaaatttcaatca 439

                                                                       
Query: 240 ttttaatggtaccaattttatgctacttctttccttcattcaaaccttgtcctataacca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttttaatggtaccaattttatgctacttctttccttcattcaaaccttgtcctataacca 499

                                                                       
Query: 300 caccattatttgtcaaacacattgcctcatttttcactaattgttaatgcatggatatat 359
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 500 caccattatttgtcaaacacattgcctcatttttcactaattattaatgcatggatatat 559

                                                                       
Query: 360 gtgagggatccttttagtcaatagttcacaccctttcaattctgtaatcaccaaattagt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtgagggatccttttagtcaatagttcacaccctttcaattctgtaatcaccaaattagt 619

                                                                       
Query: 420 agccttattcagtgacatggcttctttcagttttcaactatctgaaaatgtgacgtattt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agccttattcagtgacatggcttctttcagttttcaactatctgaaaatgtgacgtattt 679

                                                                       
Query: 480 ttgtttcatgcatgtcactcactatattaaactctattttgcttcacattgctacaatca 539
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 680 ttgtttcatgcatgtcactcactatattaagctctattttgcttcacattgctacaatca 739

                                                                
Query: 540 gnacaaaaggatcaatatattctccttctaacaagatattgatatatcatctt 592
           | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtacaaaaggatcaatatattctccttctaacaagatattgatatatcatctt 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |