AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGAACTTCTCAGCTGGGGAACGAGAGTACCAGTGAGTACAGCTTTACG
AGGTAAGTCTGATCTTGAACTTTCTAAGGAAATTCAAGACAGTCTATCAG
AAGTAAAGTGGAAAATGGCTTTACAAGTTATATTTGGCCTTGAATTTTTT
CTGGTGTTAGGAGCCCTTTTGTTCCTTTTCACATGTTATCAAGTGATTAA
GATAGGGCTGAAAATTCTGGATGAAATTCAGGGCAATCTATCAGAAGTAA
AGCGGGGAGAGAGAGTAGGAGCAAAGAGAAAATATGGTACACAAAATAAG
TATACAGGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTTAGGTTAGG
TAGGAATACCTGGAGAGAGATTAGAAGAAAAAGAGGAAAAAGGGAAAAGA
AGAAAGATCAATTAGCGGAGGTCTCTAGGAAAAGGAGCCTGTGCTCATCG
CTGGATGGGCTCGGGGAGCCAGCTCTTAGTACCTCTGAAGCAGGTGAAGA
ATCCTCCTCTGAGGAAACAGACTGGGAGGAAGAAGCAGCTCATTATGAGA
AAAAAGGGTACCAGCCAGGTAAAGTGCTAGTTAATCAGTTAAGGATAGCC
AAAGCGGCTGGCGAAGGCCAGCTTGTTTATCGGACTCACGGCAGTCGGT

TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAACTATAGCTTTGAGTGTTTACACACAGTGT
AGTGTTGTTAACGCTCTTCCTTAAGGAATCATTCTTAAAAATTGGACCTT
GGATTAAAAAAAAGACAAAACAAAACAAAACAAACAAACAACAACACCTT
TGTGATATTCACAGTGAAAATTTTATTTTCCATTATCTGGTGTCAATCAA
GGATGCCCACACATCAGCTCTAAAGGTGGCTATTGGGAGCTCTGTCATTG
CTTTCAAAGTCAGCACTTCCCCCTGAACATAGTGTGATCAAACTGAGTTT
CTTAGGCTCCCAGAGACCCCACTCTGTTAATCATATTTACATGATAGTTG
TAAAATAAAATACTGAGGCCAATAAGACAAAAAACAGACGAAGAAGGCCT
TAAGAAGACAAGGAACAAAGAGACCTACAAACTATGGTATGTTTGTGTGC
CTGTATTACTGAACGACAATGTATACAAAACAATAAAGAAAGATGAGAGT
CTCAGCTAGTTAACTTTCATTTTATGTGGCTAGACAAAGACTACTAACTT
GTCAACTAGTTTTTTTTCTTTCCTTATGAAGTCATACTTAATTCTTATAG
TTCCTCTTACATGGCGGGTACTCATTCTAAACATTGGAAATTTAA

Query= MSMg01no080_d09.g1 MSMg01no080_d09.g1 CHROMAT_FILE:
MSMg01no080_d09.g1 PHD_FILE: MSMg01no080_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:03 2005
         (540 letters)



>mm_chr2_53244429_53245368
          Length = 940

 Score = 1007 bits (521), Expect = 0.0
 Identities = 536/541 (99%), Gaps = 2/541 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caactatagctttgagtgtttacacacagtgtagtgttgttaacgctcttccttaaggaa 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caactatagctttgagtgttcacacacagtgtagtgttgttaacgctcttccttaaggaa 260

                                                                       
Query: 61  tcattcttaaaaattggaccttggattaaaaaaaagacaaaacaaaacaaaacaaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattcttaaaaattggaccttggattaaaaaaaagacaaaacaaaacaaaacaaacaaa 320

                                                                       
Query: 121 caacaacacctttgtgatattcacagtgaaaattttattttccattatctggtgtcaatc 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacaacacctttgtgataatcacagtgaaaattttattttccattatctggtgtcaatc 380

                                                                       
Query: 181 aaggatgcccacacatcagctctaaaggtggctattgggagctctgtcattgctttcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggatgcccacacatcagctctaaaggtggctattgggagctctgtcattgctttcaaa 440

                                                                       
Query: 241 gtcagcacttccccctgaacatagtgtgatcaaactgagtttcttaggctcccagagacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcagcacttccccctgaacatagtgtgatcaaactgagtttcttaggctcccagagacc 500

                                                                       
Query: 301 ccactctgttaatcatatttacatgatagttgtaaaataaaatactgaggccaataagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccactctgttaatcatatttacatgatagttgtaaaataaaatactgaggccaataagac 560

                                                                       
Query: 361 aaaaaacagacgaagaaggccttaagaagacaaggaacaaagagacctacaaactatggt 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaacagatgaagaaggccttaagaagacaaggaacaaagagacctacaaactatggt 620

                                                                       
Query: 421 atgtttgtgtgcctgtattactgaacgacaatgtatacaaaacaataaagaaagatgaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtttgtgtgcctgtattactgaacgacaatgtatacaaaacaataaagaaagatgaga 680

                                                                       
Query: 481 gtctcagctagttaactttcattttatgtggctagacaaagactactaacttg-tcaact 539
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 681 gtctcagctagttaactttcattttatgtggctagacaaagactactaa-ttggtcaact 739

            
Query: 540 a 540
           |
Sbjct: 740 a 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)