BAC Information

Click to search

BAC

Clone NameMSMg01-080F09
Chromosome2 (Build37)
Map Location 3,520,211 - 3,520,589
singlet/doubletsinglet
Overlap genenone
Upstream gene9630050M13Rik, Nmt2, Rpp38, Acbd7, Olah, Meig1, Dclre1c, Suv39h2, Hspa14, Armetl1, LOC100040219
Downstream geneLOC666495, 3110001A13Rik, LOC100040257, LOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080F09.T7 (MSMg01no080_f09.b1)MSMg01-080F09.TJ (MSMg01no080_f09.g1)
ACCAG301204AG301205
length693689
length of high quality
(start - end)
266 (66 - 331)379 (73 - 451)
definitionCHROMAT_FILE: MSMg01no080_f09.b1 PHD_FILE: MSMg01no080_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:12 2005CHROMAT_FILE: MSMg01no080_f09.g1 PHD_FILE: MSMg01no080_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGATCTTCCCCCAGTAGCTAAGGCTGTATTTACGTCTTTCCCATCTTT
GTATGTGTGCATGTGTAAAGTATATGATGCAAGTGCATATGTGTGTGTTT
GGATGTGGAAGCCAGAACATGATCTCAAGTGTCCTGGTTTGTCTCTCATC
ACTGCATTACCTTGAGACAGACTCTCTCATTGAACCTGGAGATAGCCTGT
CAGCTATCAAGCCCCAGAAGTCTCCCTGTTTTCTCCCTCACAGTGCTGTA
GTTGCACACAGTCATGTTTTCCTTTTATGTGGCTGCTGGAGATTTGAATT
CAGGCCCTCATGCTAGCTTAGTAAGCACTTTTACCCAGGGAGTTGTTTCC
CCAGCTCCAGAGCTGTGATCCCATCCCCTCCAGTCTTCTCTGATCTATAA
TAGGAGGTTCTTTGTTTTCTCCTTCACAGGGTATATCTGTTCCACCCCAA
GTCCCCACAATGTTCACAGTGTCCTTGTACCTTGACCTTGTACAGAAAAC
ACTCCTCTTCCAGTTCAAACTCTCACAGTACGCTTTCCCGACTGTTACCG
ATCTGATCCCCCAAACTTTTCATTCTGCGACCTAAACTGAGCATTCGATT
CCACCCCTCTCGAACACCTTATTACGCTTACCAACATGACTAA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCCGTGAAATGACACCAATGATTTGAA
GTAAGCCGAAAATGTTGAGTTAGCAAGGAGACTAAATACCCTGCTATACA
TGAATCAGAGGTCAAGGGTCAAATTGAGTCAAGGGGCAGGCTGAAATCCC
TGAGAATGAGTGGTATGCTCACCAACACCAACATCTTTCTACCCAAGTTG
TGCCCCTATAACACGGCCTTTATATAGACCCATCTTGACCTATGGGACTG
AAAAGTATCTACAGGATGGCTATAAGCATGATTATTAAGAATTTGCAGAC
TCTGTGCTCCAAAGCTTAGGACATGTCCCCATAGCTCAAGGTGCATGACA
ATTCATGTATATAAACCCAGTATTCCTGGCGTTTCCGTATTGCTCTGTGC
TTTTGACCACTTTATTTGTCAAGACCTTGGCAGCGAAATGACGAGGGCAC
AGCTTTTATAAATCTGTCGAAGAAAACCAATGAATGTACCTAATCTCCTC
TGGCAGCACACAGATGCCCATCTGTTCCTGGTTATACTGCCTAGTTAGCA
CAGTCTCATACCAGCCCTTTTTGGCTCCCACCTCTGCTGTTGTCCCGCGA
GAAGTCTCTCACACGCTCTCTTGAGAGAAGCTTATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_f09.g1 MSMg01no080_f09.g1 CHROMAT_FILE:
MSMg01no080_f09.g1 PHD_FILE: MSMg01no080_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:12 2005
         (379 letters)



>mm_chr2_3520011_3520789
          Length = 779

 Score =  710 bits (367), Expect = 0.0
 Identities = 376/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccgtgaaatgacaccaatgatttgaagtaagccgaaaatgttgagttagcaaggagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ttccgtgaaatgacaccaatgatttgaagtaagccgaaaatgttgagttagcaaggagac 520

                                                                       
Query: 61  taaataccctgctatacatgaatcagaggtcaagggtcaaattgagtcaaggggcaggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 taaataccctgctatacatgaatcagaggtcaagggtcaaattgagtcaaggggcaggct 460

                                                                       
Query: 121 gaaatccctgagaatgagtggtatgctcaccaacaccaacatctttctacccaagttgtg 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 459 gaaatccctgagaatgagtggcatgctcaccaacaccaacatctttctacccaagctgtg 400

                                                                       
Query: 181 cccctataacacggcctttatatagacccatcttgacctatgggactgaaaagtatctac 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 399 cccctataacacggcctttatatggacccatcttgacctatgggactgaaaagtatctac 340

                                                                       
Query: 241 aggatggctataagcatgattattaagaatttgcagactctgtgctccaaagcttaggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aggatggctataagcatgattattaagaatttgcagactctgtgctccaaagcttaggac 280

                                                                       
Query: 301 atgtccccatagctcaaggtgcatgacaattcatgtatataaacccagtattcctggcgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atgtccccatagctcaaggtgcatgacaattcatgtatataaacccagtattcctggcgt 220

                              
Query: 361 ttccgtattgctctgtgct 379
           |||||||||||||||||||
Sbjct: 219 ttccgtattgctctgtgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)