BAC Information

Click to search

BAC

Clone NameMSMg01-080G14
Chromosome2 (Build37)
Map Location 74,193,354 - 74,193,783
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
Downstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080G14.T7 (MSMg01no080_g14.b1)MSMg01-080G14.TJ (MSMg01no080_g14.g1)
ACCAG301261AG301262
length721705
length of high quality
(start - end)
---424 (67 - 490)
definitionCHROMAT_FILE: MSMg01no080_g14.b1 PHD_FILE: MSMg01no080_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:18 2005CHROMAT_FILE: MSMg01no080_g14.g1 PHD_FILE: MSMg01no080_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCTGGCGCTATACGACTCCTATTCCGAGAGGATCCGCGGAATTCTTT
GGTTACACCTTAACATTATACCAGTTTTGTTTAGTAGGTTCGAAAGCGAG
GAGCATAGCTTAAGTGCTGATGAGACAGACTATCTCCCACAGCTGAGCGG
CACGGGACGGCTCGCCACCCCAAAATTCCAGGGCGCGAGCGTTTCCCCTG
GTTTGCCTTTGTGTGTTGTGTGGCTAAGGACTCCTCGAAGGTCACATTAA
TACACTGTGTTTCTGGCTCTGAAAATCCCACCAAGCTGAATGCGGTCACC
AAACATGTTAGATCTTCTTTCACTTGAACATCCTGATGCACAATTTAAGC
AGTATAGAGATGCGAAATTAGTGTTTTATGCATATTTTCTATCCAGCTCA
TTGACATTTACCCACTGTCTCATTATAACTCTTTGTCCAACTATTTTTAT
CGGAACAGGTGCTCTATCCTGCTTATCATATTCACGTATCTCTCCACCCC
GACCGTTACTTTAATCTTGTTTTTTAAAATTTGCTTCCCATACCTTTCAA
CACTCAACTTGTCTTACCCTCTAATGTGTCTTGTCCATGTATATTGCGAC
CATTTCCCTTTTTTTTCCCCATTATTTTTTTATTCCTTCCGCCCTTGCCC
CCCCCCCATTTTTTTTTCGACCCTTACCCTGTCCCCTTTTCCCTTTTTTT
TTTCTCTCCTCTCCCCTTTTG
TGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTTGCAATATGACCGTTTTCTTTTTTCTTTTGG
ACAAACAAACGTGTAGAAAGATATCTGAGTGACTTTTTTAAAAAAAGTGG
AAGTAAATTAGAATTGTTTAAAAATATTTCTTTATGAGAGTGGGACTATA
TGAATGTGGGCTCAAGCAACTCAAAATTTATGAAAATATGGGTGTGGATC
TTTCTAGTTTATTTTGCACTTAAAGAAAGATGGTCTGTGAATACTTTAAA
AGCAAAAAATTACTCTCAAAGTTGTTAGTATACTAACTTTAAAATATTGA
CTATCCATTACAATAAGTCTTCAAATATCTCTACTTTCAATGATTTGCAA
GCCTTTGCCCTTTACTGGTTATAATAGTTTTTATTTTATGGGATATTTCT
TTTTAAATATTTTATAATTCTGACTGTTCTATCCCCAATTAGCCCAAATC
ATTAAATACTTTTATCTTAGGCTAAAATTGTTTATTGCATAGCTTATTTT
CAATGCTTTCTAGCATGTAGACTTTTTCTTTTGATGTAAGAAATTCTTCC
GTTCCATAATTTACTCAGAGGTGCTTAGGCCATACATTATGGATAATGTT
TCTTAGGTTACCCCCGCTTATATTACGACCCCACCACTTTGCCTCATTAT
TCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_g14.g1 MSMg01no080_g14.g1 CHROMAT_FILE:
MSMg01no080_g14.g1 PHD_FILE: MSMg01no080_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:18 2005
         (424 letters)



>mm_chr2_74193154_74193983
          Length = 830

 Score =  727 bits (376), Expect = 0.0
 Identities = 415/430 (96%), Gaps = 6/430 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgc-aatatgaccgttttcttttttcttttggac-aaacaaacgtgtagaaagatat 58
           |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 630 ttttgcaaatatgaccgttttcttttttcttttggacaaaacaaacgtgtagaaagatct 571

                                                                       
Query: 59  ctgagtgactttttt----aaaaaaagtggaagtaaattagaattgtttaaaaatatttc 114
           |||||||||||||||    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ctgagtgacttttttaaaaaaaaaaagtggaagtaaattagaattgtttaaaaatatttc 511

                                                                       
Query: 115 tttatgagagtgggactatatgaatgtgggctcaagcaactcaaaatttatgaaaatatg 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tttatgagagtgggactatatgaatgtgggctcaagcaactcaaaatttatgaaaatatg 451

                                                                       
Query: 175 ggtgtggatctttctagtttattttgcacttaaagaaagatggtctgtgaatactttaaa 234
           ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 450 ggtgtggatttttctagtttattttgtacttaaagaaagatggtctgtgaatactttaaa 391

                                                                       
Query: 235 agcaaaaaattactctcaaagttgttagtatactaactttaaaatattgactatccatta 294
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 agcaaaaaattactcccaaagttgttagtatactaactttaaaatattgactatccatta 331

                                                                       
Query: 295 caataagtcttcaaatatctctactttcaatgatttgcaagcctttgccctttactggtt 354
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 330 caataagtcttcaaatatctctactttcaatgatttgcaagcctttgtcctttactggct 271

                                                                       
Query: 355 ataatagtttttattttatgggatatttctttttaaatattttataattctgactgttct 414
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||
Sbjct: 270 ataatagtttttattttatgggatatttcttttaaaatattttataattctgactgggct 211

                     
Query: 415 atccccaatt 424
           ||||||||||
Sbjct: 210 atccccaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 830
Length adjustment: 9
Effective length of query: 415
Effective length of database: 821
Effective search space:   340715
Effective search space used:   340715
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)