BAC Information

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BAC

Clone NameMSMg01-080N16
Chromosome2 (Build37)
Map Location 88,852,660 - 88,852,940
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215
Downstream geneOlfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080N16.T7 (MSMg01no080_n16.b1)MSMg01-080N16.TJ (MSMg01no080_n16.g1)
ACCAG301592AG301593
length702730
length of high quality
(start - end)		541 (41 - 581)290 (70 - 359)
definitionCHROMAT_FILE: MSMg01no080_n16.b1 PHD_FILE: MSMg01no080_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:53 2005CHROMAT_FILE: MSMg01no080_n16.g1 PHD_FILE: MSMg01no080_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTATTTTTCATTATGTATTTATACTAGTAAAAATAAATAATTTATAACA
AATCAGTTATAAAATATAACAATATATATATACTGTTACATATATTCATA
TACATATACCTGTACCATATAATATAACGATATATGTATATATTCATTGC
TGGATACATATACATTATGTATATATGTATATAGCATCAAATGTATGCTA
GTTAGATGGTCTCTATCGACTGAGCTCCAGTCCCAGCCCCAACCCAGTGA
GTTTCATCAGGCTTGTCTACAAGAGCATGAGCACCTTAGCAGTAGTTACA
CCACTGAAGAAAATGTCACTTCTCTCTCAGCAACCGTTATGTATATATAT
ACATGCATACATACATATCTGCATGAATGCCTATATGAATATGTACATGT
ACACATGTGCATGTGTATAAACATATGCATATATGTGTGTATGAATGTAT
GTGTGTATGAGTGCATATGGGTATATATGTAAATATTTACACATAAAATT
TTATTAAGCTTTTGTGCTGCTAATACATGAGAGAACAGATACCTTTTAAA
TTATTTTTTAATATACCTATAGTTAATTAACTTATCCTTTCCCTGTCCTT
ATTTCAGTTCTTTCCATACACACCTTTGTGCTTAAACTCACTGCCTCCAT
TA

GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGGAATTAAAGCATTTCAAATATACAATGA
AATAAATAAGGTAAAATTGAACTCCCTTTAATTTTATATAACAATGATGA
GTAGCCAAGCCAGAGTGAAAATATGAAACCAGAAATATAGCCAACATCCC
GCTATTAAGGTGCTCTATATCAAATTTTGTTATATCATCATAAAAGCAAT
GCTTTATTTTCTCAATAAAATATTAGGTTCTTTATTCTTTAGATTTAGAG
GTATATATTTGTGTGCTTAGTTTGGTGTGTGTGTGTGTGTGTGTGTGTGT
TTCTTCCCCCTTCCCTCCCCGCCCCTTCCTTCTTTTTTTTTTTCCTCTTC
CCCTTTCTCCCCTTTTTTTTTTTCTCCCCCCCCCCCCTCTTTTCTCTTCT
CCCTCCCTTTTCCTATTCCTTTTTCTTTTCTCTTTCCATGCCCCCTCCCC
CTTCTTCCCCCCCCTTTCTTTTTTATTTCCCCTTTTCTCTTTCCCACCCC
CCCCCTTCTTCTCACTCTGCATTTTCCGCGTTCTATTTCTCATCTCCCTC
CCCCCCCTTTTCCTCTTCTCCCCCTTTATTTTTTTTTTTCCATCCTCTCC
TTTCCTCTCTTGCATATACCCATTCTCCCTCCCACATATTTCCTCCCACC
CCACTCCCACTCACCTTTTTATTCATCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_n16.g1 MSMg01no080_n16.g1 CHROMAT_FILE:
MSMg01no080_n16.g1 PHD_FILE: MSMg01no080_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:53 2005
         (290 letters)



>mm_chr2_88852460_88853149
          Length = 690

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggaattaaagcatttcaaatatacaatgaaataaataaggtaaaattgaactcccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggaattaaagcatttcaaatatacaatgaaataaataaggtaaaattgaactcccttt 260

                                                                       
Query: 61  aattttatataacaatgatgagtagccaagccagagtgaaaatatgaaaccagaaatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattttatataacaatgatgagtagccaagccagagtgaaaatatgaaaccagaaatata 320

                                                                       
Query: 121 gccaacatcccgctattaaggtgctctatatcaaattttgttatatcatcataaaagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaacatcccgctattaaggtgctctatatcaaattttgttatatcatcataaaagcaa 380

                                                                       
Query: 181 tgctttattttctcaataaaatattaggttctttattctttagatttagaggtatatatt 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tgctttattttctcaataaaatattaggttctttattcattagatttagaggtatatatt 440

                                                    
Query: 241 tgtgtgcttagtttggtgtgtgtgtgtgtgtgtgtgtgtgt 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtgcttagtttggtgtgtgtgtgtgtgtgtgtgtgtgt 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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