BAC Information

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BAC

Clone NameMSMg01-080P07
Chromosome2 (Build37)
Map Location 44,581,243 - 44,581,607
singlet/doubletsinglet
Overlap geneGtdc1
Upstream geneArhgap15
Downstream geneZeb2, LOC100042661
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080P07.T7 (MSMg01no080_p07.b1)MSMg01-080P07.TJ (MSMg01no080_p07.g1)
ACCAG301670AG301671
length681687
length of high quality
(start - end)
371 (44 - 414)327 (76 - 402)
definitionCHROMAT_FILE: MSMg01no080_p07.b1 PHD_FILE: MSMg01no080_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:00 2005CHROMAT_FILE: MSMg01no080_p07.g1 PHD_FILE: MSMg01no080_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGG
AATTCACAAAAATCCCGCAGCCTCTGCTCCTGAGTGCTGGGGATTAAAGG
CATGTACTACTAAACGCAGCTAGTAAATAAACTTTAAAACATGACATGTC
TACTGAGAATGAAATAATTATAAACTAGCAAAGAGTATAAGACCCTAAAA
TTTGAATTAAAAGATGTAATTCTAATTTACTAGTATTGTAGTTCTTAAGT
GATAATTAACTTATATTTACTTGTTCAAACTGAGGTTAAATTCTATTTGG
CAAACTGATAAAGGAGTATTTCTTTTTATGTAAAAAGGTATTGAGTTTCA
AAAGTTAAGGTTTCACATACAGACATCACATGTCCGTGTAGATATAATGA
AGTCTGTTAAAGTACCAAGGTTAAATGTAAGGTCTTCAGTATCAGAGGCC
TTTGAAAAACAGTATTATAGTCTTATCTATCAGATATGTATGTGACTTGA
ACAATGTTAACAATCTCCCACATAATACAGCATTATCAAATGCCATCCAC
TATGACAGTTTTCATTCTACTTCAGCTTCATGCTGTTTAACTGCCCTCCC
TTCTGAAAACCATGAGTAACTACTCTATCAATCATGGCTTCGACGACTTT
TATTTGACAATTCCCCTTTACCAATCTATAT
AACGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTATCTCTCCAATCCTTATTGTGT
GAGGTTCATATGTATTTTGATCTTTAGTAACACTTTTTTTTACAATATGG
GTGCCCTTGCATTTGGTGCATAGATGTTCAGAATTTAGAGTTCATCTTGG
TGGATTTTTCCTTTAATAAGTATGTAGTGTCCTTCCCCCTCTTCTTTGAT
AACTTTTGGTTGAAATCTATTTTAGTGGGTATTTGAATGGCTACTCCAGC
TTGTTTCTTGGGACCATTTACTTGGAAAATTTTTCCCCATCCTTTTACTT
TGAGAGAATGTCTGTGTGTGACTCTGAGTTGTGTTTCCTGCATGCAGCAG
AATGGTGGATCCTCGCTTACATATTAGTATGTTAGCCTATGTCTTTATTG
CGGGGATTGAGTCCATTGGCGTTGAGAGATATTAGTGTACATTGCCAGTT
GTTTCTTGTTATTTTGCCTGTGAGAGCTCTCCTTATCTTAGCCCTTACCT
TCTCACTCTTATTCATCTACCTTTTTTCTTCATTCTCTTTACCCTATCCT
TTTCCCCTCTTTTTTTTCCCTCCCTTTCCCTTCCCTCATCCCACCCCCTT
CTTTTATTCTTCACTCTTACTCACCCTCTCTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_p07.b1 MSMg01no080_p07.b1 CHROMAT_FILE:
MSMg01no080_p07.b1 PHD_FILE: MSMg01no080_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:00 2005
         (371 letters)



>mm_chr2_44581037_44581807
          Length = 771

 Score =  683 bits (353), Expect = 0.0
 Identities = 362/365 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcacaaaaatcccgcagcctctgctcctgagtgctggggattaaaggcatgtacta 66
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcacaaaaatccagcagcctctgctcctgagtgctggggattaaaggcatgtacta 266

                                                                       
Query: 67  ctaaacgcagctagtaaataaactttaaaacatgacatgtctactgagaatgaaataatt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctaaacgcagctagtaaataaactttaaaacatgacatgtctactgagaatgaaataatt 326

                                                                       
Query: 127 ataaactagcaaagagtataagaccctaaaatttgaattaaaagatgtaattctaattta 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ataaactagcaaagagtataagaccctaaaatttgaattaaaagatgtaattctaattta 386

                                                                       
Query: 187 ctagtattgtagttcttaagtgataattaacttatatttacttgttcaaactgaggttaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctagtattgtagttcttaagtgataattaacttatatttacttgttcaaactgaggttaa 446

                                                                       
Query: 247 attctatttggcaaactgataaaggagtatttctttttatgtaaaaaggtattgagtttc 306
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 447 attctatttggcaaactgataaaggagtatttctttttatgtaaaaagttattgagtttc 506

                                                                       
Query: 307 aaaagttaaggtttcacatacagacatcacatgtccgtgtagatataatgaagtctgtta 366
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaaatttaaggtttcacatacagacatcacatgtccgtgtagatataatgaagtctgtta 566

                
Query: 367 aagta 371
           |||||
Sbjct: 567 aagta 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)