BAC Information

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BAC

Clone NameMSMg01-081B05
Chromosome2 (Build37)
Map Location 82,230,003 - 82,230,352
singlet/doubletsinglet
Overlap geneA130030D18Rik
Upstream geneLOC100040704, Zfp804a, LOC100041308
Downstream geneEG624362, LOC433550, LOC269292, LOC433440, Fsip2, LOC545429, Ppia-ps2_981.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081B05.T7 (MSMg01no081_b05.b1)MSMg01-081B05.TJ (MSMg01no081_b05.g1)
ACCAG301762AG301763
length745746
length of high quality
(start - end)
346 (44 - 389)305 (71 - 375)
definitionCHROMAT_FILE: MSMg01no081_b05.b1 PHD_FILE: MSMg01no081_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:10 2005CHROMAT_FILE: MSMg01no081_b05.g1 PHD_FILE: MSMg01no081_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAAATTAAAGCTCCCACATTGGACAGAACTAGAAATGGACTGGGAG
GTGACAGAAATGGTATGGTCATCACAGGAAGAATAACCAAAACCTTTCAA
GCCAAGTTTCAACAACAGCAGCTCAGACACATTTTCATAAAGAAGCTTGC
TATACCTTCTTCATAAGCTCTGTTGCAAAAAGGGTCATTTTAGGCAGTAG
ATAGATGAATTGTCTAATTGGGAAAAGACACATTGTTTGTCCTGTAACTT
GACTCTTGGCTTTGGACAGACTTTTAAACACTTAAAAAAAAAAACAATAA
ACAAACTATTCAGGGGCAGATCCCTGTAAGTCTCATCATTCACTCAGAAT
TCCTGACCCAGAATTGTACTGTCTAAAAGAACTACAGGGACAAAAAAATG
AGGACTGAAGGAAAGCGGAAGCAAAACCCCGCCCAGCTTGGGATCCATCT
TGTGGCACTCGGCCTTGACGCTACTATGTCCTGACGATGAGCTCTCAGAA
CGGAACCCTACTATTGACTGCCCTCTGTCACGCCCTATTGGAAATTTGAT
TGGTACCGTAATCAAATTCCAATCCCTATCCATCTGGAGTGTAGCTAAGA
AACCCTTATGGTTGGACGTAGAGGTATGACTGATATAAGTGGTTCAGTTA
AACCCACCCTATAAAAAAGACCACAATGGCTACTTAAACACAAAT
TAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTAATGGTTATCTGTGTCGAAAAGAACTA
TCACTGATGCTTAATGAGGGCCATACTGCATATGGGTATAAAGATAAATA
TTTAGAATCTAGTCAGATATTATACTGATGTAGGAAGTGACTATAGTAAT
GTTACCTGTAGAATGCATGCCCTCTTCAGACACAAGCATTCAGCTATATT
TCAGTATCAGACCTGAATTTCCTCCTCTAGTGTAGGAATTAAACATATTT
AGATTTCTATTGATTATTAATGCTGTTATTCCACTACTGGAAATATCTTG
CTAGGCCTGTCTCTGTTTCTGGTTCATAAGGTTTTTTCTTTTGCTGTTGT
TGTTTTTCTTTTTTCAGTTGTTCATGTCCACGGCTTACTTTCTAACAGAC
CGTCTTTTCCCAGTTCCAGACACAATACAACATTTCATTTTGCAAATTAT
CTCCGCCCCTTTTTATCTTTTCTCTTCCCTCTTCCTGGGGTGATGTTGAT
TTTGTCCTCTTCCTTACATTTTCCTCTCTTATTTCTTCAATTTTTCCTCC
CCTCCTTTTTCCTACCCTCCTTCTCTCTTCCCCCTCTTCCTTCCTTCCTT
CTTTCTCTCCTCTTCCCGTTCCTTCTTTTCTCTACACACCACTATCCTTC
CCATCACACCATCCCTCCCCTATCTTCTCCTTCTTCTCCTCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_b05.b1 MSMg01no081_b05.b1 CHROMAT_FILE:
MSMg01no081_b05.b1 PHD_FILE: MSMg01no081_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:10 2005
         (346 letters)



>mm_chr2_82229799_82230545
          Length = 747

 Score =  607 bits (314), Expect = e-178
 Identities = 338/350 (96%), Gaps = 8/350 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaaattaaagctcccacattggacagaactagaaatggactgggaggtgacag 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaaattaaagttcccacattggacagaactagaaatggactgggaggtgacag 264

                                                                       
Query: 65  aaatggtatggtcatcacaggaagaataaccaaaa-cctttcaagccaagtttcaacaac 123
           ||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 aaacgatatggtcatcacaggaagaataaccaaaaacctttcaagccaagtttcaacaac 324

                                                                       
Query: 124 agcagctcagacacattttcataaagaagcttgctataccttcttcataagctctgttgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcagctcagacacattttcataaagaagcttgctataccttcttcataagctctgttgc 384

                                                                       
Query: 184 aaaaagggtcattttaggcagtagatagatgaattgtctaattgggaaaagacacattgt 243
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaaagggtcattttaggcagtagatagatgaattgtctaattgggaaaagacacattgt 444

                                                                       
Query: 244 ttgtcctgtaacttgactcttggctttggacagacttttaaacacttaaaaaaaaaaa-- 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 445 ttgtcctgtaacttgactcttggctttggacagacttttaaacacttaaaaaaaaaaaaa 504

                                                             
Query: 302 -----caataaacaaactattcaggggcagatccctgtaagtctcatcat 346
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaaacaataaacaaactattcaggggcagatccctgtaagtctcatcat 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 747
Length adjustment: 9
Effective length of query: 337
Effective length of database: 738
Effective search space:   248706
Effective search space used:   248706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)